View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17000_low_14 (Length: 250)
Name: NF17000_low_14
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_low_14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 2910020 - 2910188
Alignment:
| Q |
82 |
ttacaagagtttcaaagcgtgatcacttttcaacaccgccgtcacttttaaactccaccatcacgttcctatcagcaccgctccgatgagttcccagcgt |
181 |
Q |
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| T |
2910020 |
ttacaagagtttcaaagcgtgatcacttttcaacaccaccgtcacttttgaactccaccatcacgttcctatcagcaccgctccgatgagttcccggcat |
2910119 |
T |
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| Q |
182 |
ctccactctcactccaatccatcgcctccgtcagtaaccctccccgacgaggttctcaccgaaatccta |
250 |
Q |
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| T |
2910120 |
ctccactctcactccaatccatcacctccgtcagtaaccctccccgacgaggttctcaccgaaatccta |
2910188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 2909973 - 2910022
Alignment:
| Q |
14 |
aaatctagacacatcatttccacatcactaatcacatctgtaatcattta |
63 |
Q |
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| T |
2909973 |
aaatctagacacatcatttccacatcactaatcacatctgtaatcattta |
2910022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 2907079 - 2907143
Alignment:
| Q |
151 |
tatcagcaccgctccgatgagttcccagcgtctccactctcactccaatccatcgcctccgtcag |
215 |
Q |
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| T |
2907079 |
tatcagaaccgctccgatgagttcccggcgtctccgctctcactccaaaccatcaccgccgtcag |
2907143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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