View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17000_low_16 (Length: 221)
Name: NF17000_low_16
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_low_16 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 9256644 - 9256534
Alignment:
| Q |
15 |
gagatgaagagaagaaaacctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaa |
114 |
Q |
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| T |
9256644 |
gagatggagagaagaaaacctataatatcacaagtagacataggcaacagaactccaatattaggcctaacacaatatttctcaggaattgtagtcttaa |
9256545 |
T |
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| Q |
115 |
cctgcaagttg |
125 |
Q |
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| T |
9256544 |
cctgcaagttg |
9256534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 9168845 - 9168955
Alignment:
| Q |
15 |
gagatgaagagaagaaaacctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaa |
114 |
Q |
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|||||| ||||||||||||||||||||||| ||||||| || |||||| ||| ||||||||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
9168845 |
gagatggagagaagaaaacctataatatcacaagtagacataggcaacataactccaatattaggcctaacacaatatttctcaggaattgtagttttaa |
9168944 |
T |
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| Q |
115 |
cctgcaagttg |
125 |
Q |
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| T |
9168945 |
cctgcaagttg |
9168955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 9231449 - 9231356
Alignment:
| Q |
32 |
acctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaagttg |
125 |
Q |
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| T |
9231449 |
acctgtaatatcagaaatagacgtaggcaacagaactccaatattaggcctaacacaatatttctcaggaattgtagtcttaacctgcaagttg |
9231356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 9267279 - 9267186
Alignment:
| Q |
32 |
acctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaagttg |
125 |
Q |
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| T |
9267279 |
acctataatatcagaaatagacgtaggcaacagaactccaatattaggcctaacacaatatttctcaggaactgtagtcttaacctgcaagttg |
9267186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 9155502 - 9155415
Alignment:
| Q |
38 |
aatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaagttg |
125 |
Q |
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| T |
9155502 |
aatatcacaagtagacctaggcaacactactccattattaggcctaacacaatatttctcaggaattgtagtcttaacctgcaagttg |
9155415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 9309931 - 9310017
Alignment:
| Q |
32 |
acctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctg |
118 |
Q |
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| T |
9309931 |
acctgtaatatcacaagtagacctaggcaacacaactccattattaggcctaacacaatacttctttggatttgtagtcttaacctg |
9310017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 37315 - 37222
Alignment:
| Q |
32 |
acctataatatcataagtagatgtaagcaacagaacaccaatattaggcctaacacaatatttctcagaaatcgtagtcttaacctgcaagttg |
125 |
Q |
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| T |
37315 |
acctgtaatatcagaaatagacgtaggcaacagaactccaatattaggcctaacacaatatttctcaggaattgtagtcttaacctgcaagttg |
37222 |
T |
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