View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17000_low_2 (Length: 672)
Name: NF17000_low_2
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 50 - 660
Target Start/End: Complemental strand, 402069 - 401459
Alignment:
| Q |
50 |
atggtgtgctgggaggctgctaacccaaacaattggtttctgtgtttgaagggtgttggaagaccnnnnnnnnctctctcaattgcttgaagccggctgg |
149 |
Q |
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| T |
402069 |
atggtgtgctgggaggctgctaacccaaacaattggtttctgtgtttgaagggtgttggaagaccaaaaaaaactctctcaattgcttgaagccggctgg |
401970 |
T |
|
| Q |
150 |
tttaactgggaataaaatcgagattgtatttatgagatgccagaataaatatttgctggttttcggagatttcattcaacgaaacattataggtctcaat |
249 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401969 |
tttaactgtggataaaatcgagattgtatttatgagatgccagaataaatatttgctggttttcggagatttcattcaacgaaacattataggtctcaat |
401870 |
T |
|
| Q |
250 |
cttcgaaccctttcaggtggaacaaacctctgaagtcttgccaatatagcgcctatggctatgggatgtggctgttgtgctggaatgggagagggctgtg |
349 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401869 |
cttcgaaccctttcagatggaacaaacctctgaagtcttgccaatatagcgcctatggctatgggatgtggctgttgtgctggaatgggagagggctgtg |
401770 |
T |
|
| Q |
350 |
atgtcctatattcagtttcatatctgtgacaactgatgtttattatctgcttctgcaacacaatgcttgtctctgtaattaaacatttaacaaatttggg |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
401769 |
atgtcctatattcagtttcatatctgtgacaactgatgtttattatctgcttctgcaacacaatgcttatctgtgtaattaaacatttaacaaatttggg |
401670 |
T |
|
| Q |
450 |
cttttaattcccttcctctgactttgtgatgctttttggcaggtttggcaggcacttttggctgttagaacacttgtgctgccaccagctgaagacattg |
549 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401669 |
cttttaattcccttcctctgactttgtgatgctttttggcaggtttggcaggcacttttggctgttagaacacttgtgctgccaccagctgaagacattg |
401570 |
T |
|
| Q |
550 |
aaacatggctcaattttgcttctctttgcagaaaaagtgggcgcattagccaagcaagatctactttagttaaacttctacaggtttgaactgtgcacct |
649 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401569 |
aaacatggctcaattttgcttctctttgcagaaaaagtgggcgcattagccaagcaagatctactttagttaaacttctacaggtttgaactgtgcacct |
401470 |
T |
|
| Q |
650 |
ggtctatgatg |
660 |
Q |
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| T |
401469 |
ggtctatgatg |
401459 |
T |
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