View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17000_low_3 (Length: 539)
Name: NF17000_low_3
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 252 - 522
Target Start/End: Original strand, 51537913 - 51538183
Alignment:
| Q |
252 |
gtgcactggaacgacaacggagaacacccactcaaacctgaaagaacggatatgagtatgccgaacggtgagaaactaccgacgaacaagacataaaggc |
351 |
Q |
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| T |
51537913 |
gtgcactggaacgacaacggagaacacccactcaaacctgaaagaacggatatgagtatgccaaacggtgagaaactaccgacgaacaagacataaaggc |
51538012 |
T |
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| Q |
352 |
cctccaacgaacaactggcaactgacgaaacaaacacaacggacgagcaacaaaaaccacatgagggagcttaactccaaccaagcacaacaactcaatc |
451 |
Q |
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| T |
51538013 |
cctccaacaaacaactagcaactgaagaaacaaacacaaccgacgagcaacaaaaaccacatgagggagcttaacaccaaccaagcacaacaactcaatc |
51538112 |
T |
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| Q |
452 |
ccgaaacaaaccatctcccgaccacggaccaccaccaccgtcaatcgacgtgcgtgaacacgcaccattct |
522 |
Q |
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| T |
51538113 |
ccgaaacaaaccatctcccgaccacggaccaccaccactgtcaatcgacgtgcgtgaacacccaccattct |
51538183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 51537752 - 51537851
Alignment:
| Q |
92 |
cagaccctttcgaatttttgagtcacaaacacgcaaccattacaaaatgagtaagtctaaatctcccaatctcgtttcgaacatcaaaacagtcgtccga |
191 |
Q |
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| T |
51537752 |
cagaccctttcgaatttttgagtcacaaacgcgcaaccattacaaaatgagtaagtctaaatctcccgatctcatttcgaacaacagaacagtcgtccga |
51537851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 51537647 - 51537739
Alignment:
| Q |
11 |
cagagagtcgaagaagtatgtcaccaaacacagccggtttcaacgcataagaactcagatcgagtgatgagtcttagaaatcagaccctttcg |
103 |
Q |
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| T |
51537647 |
cagagagtcgaagaagtatgccaccaaacacagccgattttaacgtataagaactcagatcgaatgatgagtattagaaaccagacccattcg |
51537739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 41839738 - 41839770
Alignment:
| Q |
51 |
caacgcataagaactcagatcgagtgatgagtc |
83 |
Q |
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| T |
41839738 |
caacgcataagaactcagatcgagggatgagtc |
41839770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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