View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17000_low_5 (Length: 395)
Name: NF17000_low_5
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 7065030 - 7064664
Alignment:
| Q |
16 |
tatgcatggtgacatccaccagatgttgtagtgcttgttaagctatcttactcgctgtttttcggacagccctattcacatagttgcttgatcactcgtt |
115 |
Q |
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| T |
7065030 |
tatgcatagtgacatccaccagatgttgtagtgcttgttaagctatcttactcgctgtttttcggacagccctattcacatagttgcttgatcactcgtt |
7064931 |
T |
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| Q |
116 |
cgtagccatcttatcgctatacttttggcgttgttgacccatcttagtcaatttctacgccaaattagtttttacaatgcttctgaatcttgtgatctga |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7064930 |
cgtagcaatcttatcgctatacttttggcgttgttgacccatcttagtcaatttctacgccaaattagtttttacaatgcttctgaatcttgtgatctga |
7064831 |
T |
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| Q |
216 |
tactatctataattcaaaatatttgcttgctaattcaaaatctgaattgcaatgtgataacaacgatcattcacaagttcagacgactttgtaagaaagg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7064830 |
tactatctataattcaaaatatttgcttgctaattcaaaatctgaattgcaatgtgataacaacgatcattcacaagttcagacgactttgtaagaaagg |
7064731 |
T |
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| Q |
316 |
aatgacacctttgtcaacaactacagtgtaattatggtaatgttaaaatcaatacctgtgacattaa |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7064730 |
aatgacacctttgtcaacaactacagtgtaattatggtaatgttaaaatcaatacctgtgacattaa |
7064664 |
T |
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