View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17000_low_9 (Length: 305)

Name: NF17000_low_9
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17000_low_9
NF17000_low_9
[»] chr4 (1 HSPs)
chr4 (19-305)||(2910169-2910455)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 2910455 - 2910169
Alignment:
Q  19 acaatctttgtcgccattcaatatgaagtaaggattttcaggaagggtgataggatggttttcgagtaaatgattgacgggaaagggaatgaaaacgtac 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2910455 acaatctttgtcgccattcaatatgaagtaaggatcttcaggaagggtgataggatggttttcgagtaaatgattgacgggaaagggaatgaaaacgtac 2910356  T
Q  119 ttatgattctgtgtccagttattgacatagaaaagataagagtatggattttgtgaagataatgaatgattaagatggatattgatgaatgaaggatgcg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2910355 ttatgattctgtgtccagttattgacatagaaaagataagagtatggattttgtgaagataatgaatgattaagatggattttgatgaatgaaggatgcg 2910256  T
Q  219 aaattagggttttccatgacttacatacggatttcatctgatttagagatttgactggaaggcgggataggatttcggtgagaacct 305  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2910255 aaattagggttttccatgacttacatacggatttcatctgaattagagatttgactggaaggcgggataggatttcggtgagaacct 2910169  T

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