View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17001_high_1 (Length: 1334)
Name: NF17001_high_1
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 1295; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1295; E-Value: 0
Query Start/End: Original strand, 1 - 1319
Target Start/End: Complemental strand, 54635939 - 54634621
Alignment:
| Q |
1 |
gtagtttattttatgaggttccaagtcatctcaggaacatagcaactcgcagattataacaattgtttgccacagtaacacctagtttatttttatctgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54635939 |
gtagtttattttatgaggttccaagtcatctcaggaacatagcaactcgcagattttaacaattgtttgccacggtaacacctagtttatttttatctgt |
54635840 |
T |
|
| Q |
101 |
taaaaataattatctaccgattgtctttgagatttcgtaatgcatgcaatgagtgcgtaattccttcaaattaatggctccaataaaatcattaacatac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635839 |
taaaaataattatctaccgattgtctttgagattttgtaatgcatgcaatgagtgtgtaattccttcaaattaatggctccaataaaatcattaacatac |
54635740 |
T |
|
| Q |
201 |
aaaaagctaaaatatgagggaaaagcatgaggtaaattcacctgcttgtaagcccggacatttttacttctctttggcattgagtacaacattttaggac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54635739 |
aaaaagctaaaatatgagggaaaagcatgaggtaaattcacctgcttgtaagcccggacatttttacttctctttggcattgagtacagcattttaggac |
54635640 |
T |
|
| Q |
301 |
ttttatctgcactaaaaggatcctgtccataaattctaaacaatggatgacaacccccttccccatcaaagtttgggaagaatctaagtataatacagtc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635639 |
ttttatctgcactaaaaggatcctgtccataaattctaaacaatggatgacaaccaccttccccatcaaagtttgggaagaatctaagtataatacagtc |
54635540 |
T |
|
| Q |
401 |
caacatgagtgccctgtcgagcggaggccaatctaaggccacattcctcctagaaacatactgcagatacctcagttgggaaggaattggattcaacggc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635539 |
caacatgagtgccctgtcgagcggaggccaatctaaggccacattcctcctagaaacatactgcagatacctcagttgggaaggaattggattcaacggc |
54635440 |
T |
|
| Q |
501 |
gtcaacaaatgtaaaagctggtgtggggactgccgataaatcatatccaaagtcctatgctcgccactataaaccttccgataaatcaacaatgcagcta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635439 |
gtcaacaaatgtaaaagctggtgtggggactgccgataaatcatatccaaagtcctatgctcgccactataaaccttccgataaatcaacaatgcagcta |
54635340 |
T |
|
| Q |
601 |
acatgaaagccataacgggccaaccaccacgttcacaatgcatcaacaacacattgtgttgaccaagtgaaagccaactttcactagaccttaaaaagtg |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635339 |
acatgaaagccataacgggccaaccaccacgttcacaatgcatcaacaacacattgtgttgaccaagtgaaagccaactttcactagaccttaaaaagtg |
54635240 |
T |
|
| Q |
701 |
gtgaatgagctccattttaagcacaggacaaccttcataatgcctaggataatccattatagtaatgtcatactcagatattatatttgccatcaaactc |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635239 |
gtgaatgagctccattttaagcacaggacaaccttcataatgcctaggataatccattatagtaatgtcatactcagatattatatttgccatcaaactc |
54635140 |
T |
|
| Q |
801 |
ttggtctcttcctcgcgaaaattgaaaaccaaaatagaagcatcaggcacattctctctaagctgacctactataccatccatatacactttatacttct |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635139 |
ttggtctcttcctcgcgaaaattgaaaaccaaaatagaagcatcaggcacattctctctaagctgacctactataccatccatatacactttatacttct |
54635040 |
T |
|
| Q |
901 |
cttcattccaagcttccgttgtgaaacagcaatcaaaaactacattcacacaccaatgttaattttaatttatttttccaatgagaaaaggagagatgca |
1000 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54635039 |
cttcattccaagcttccgttgtgaaacagcaatcaaaaactacattcacacaccaatgttaattttaatttatttttccaatgagaaaaggagagatgca |
54634940 |
T |
|
| Q |
1001 |
ttgtcagcgtaaactagttttacactgacattgaaaattagacagttaattctacaaatagtaagtattaattgcgaaaaaataatttccaaaattctga |
1100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54634939 |
ttgtcagcgtaaactagttttacactgacattgaaaattagacagttaattctacaaatagtaagtattaattgcgaaaaaataatttccaaaattctga |
54634840 |
T |
|
| Q |
1101 |
gaaataaattgaaacaatttccaatatataatttctatctatctttgatactaagatatggttatggcacataatagcatttccctcaatatattattct |
1200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54634839 |
gaaataaattgaaacaatttccaatatataatttctatctatctttgatactaagatatggttatggcacataatagcatttccctcaatatattattct |
54634740 |
T |
|
| Q |
1201 |
ctaacaaaaatctacattttggagataataatgaaacgaatattgctggaattatgaattgcagaagaatagtatgaagaaataaactttggcggttttt |
1300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54634739 |
ctaacaaaaatctacattttggagataataatgaaacgaatattgctggaattatgaattgcagaagaatagtatgaagaaataaactttggcggttttt |
54634640 |
T |
|
| Q |
1301 |
tgaagagaagcgtgtaatt |
1319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
54634639 |
tgaagagaagcgtgtaatt |
54634621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 54636014 - 54635928
Alignment:
| Q |
8 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattataacaattgtttgccacagtaacacc-tagtttatttt |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54636014 |
attttatgaggttccaagtcatctcaggaacatagcaactcgcagattttaacaattgtttgccacagtaacaccgtagtttatttt |
54635928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1049 - 1138
Target Start/End: Complemental strand, 49026096 - 49026007
Alignment:
| Q |
1049 |
attctacaaatagtaagtattaattgcgaaaaaataatttccaaaattctgagaaataaattgaaacaatttccaatatataatttctat |
1138 |
Q |
| |
|
|||| |||||||| ||||||| |||| ||||||||||||| ||| || ||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
49026096 |
attccacaaatagcaagtatttattgagaaaaaataattttcaattttttgagaaataaatttgcacaatttccaatatataacttctat |
49026007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1049 - 1135
Target Start/End: Original strand, 41728905 - 41728991
Alignment:
| Q |
1049 |
attctacaaatagtaagtattaattgcgaaaaaataatttccaaaattctgagaaataaattgaaacaatttccaatatataatttc |
1135 |
Q |
| |
|
|||| ||||||| ||||||| || | |||||| | |||| |||| || ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
41728905 |
attccacaaataacaagtatttatcgggaaaaatttattttcaaatttttgagaaataaattgacacaatttccaatagataatttc |
41728991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1054 - 1140
Target Start/End: Original strand, 37147839 - 37147925
Alignment:
| Q |
1054 |
acaaatagtaagtattaattgcgaaaaaataatttccaaaattctgagaaataaattgaaacaatttccaatatataatttctatct |
1140 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||| ||||| | |||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
37147839 |
acaaatagtaagtatttattgaaaaaaattaattatcaaaagtttgagaaataaattgccacaatttccaatatgtaatttccatct |
37147925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 983 - 1030
Target Start/End: Complemental strand, 21915068 - 21915021
Alignment:
| Q |
983 |
gagaaaaggagagatgcattgtcagcgtaaactagttttacactgaca |
1030 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
21915068 |
gagaaaaggggatatgcattgtcagtgtaaactagttttacactgaca |
21915021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1049 - 1108
Target Start/End: Original strand, 7196070 - 7196129
Alignment:
| Q |
1049 |
attctacaaatagtaagtattaattgcgaaaaaataatttccaaaattctgagaaataaa |
1108 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||| |||||| ||||||| | ||||||||| |
|
|
| T |
7196070 |
attccacaaatagtaagtatttattgagaaaaagtaattttcaaaattttaagaaataaa |
7196129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 980 - 1022
Target Start/End: Complemental strand, 37034796 - 37034754
Alignment:
| Q |
980 |
aatgagaaaaggagagatgcattgtcagcgtaaactagtttta |
1022 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
37034796 |
aatgagaaaaggagacatgcattgtcaatgtaaactagtttta |
37034754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University