View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17001_high_3 (Length: 570)

Name: NF17001_high_3
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17001_high_3
NF17001_high_3
[»] chr8 (4 HSPs)
chr8 (19-475)||(42147006-42147470)
chr8 (438-556)||(17290595-17290715)
chr8 (494-556)||(40391403-40391465)
chr8 (332-364)||(24795916-24795948)
[»] chr3 (9 HSPs)
chr3 (19-292)||(24178038-24178320)
chr3 (432-542)||(18534437-18534547)
chr3 (440-559)||(18705523-18705642)
chr3 (385-550)||(3592991-3593157)
chr3 (383-492)||(24177927-24178038)
chr3 (457-551)||(30993244-30993338)
chr3 (499-556)||(3290666-3290723)
chr3 (460-528)||(3483623-3483690)
chr3 (464-556)||(15777344-15777433)
[»] chr1 (4 HSPs)
chr1 (457-559)||(18513819-18513921)
chr1 (457-542)||(23632181-23632266)
chr1 (462-529)||(9131711-9131777)
chr1 (464-542)||(12786235-12786314)
[»] chr2 (3 HSPs)
chr2 (462-556)||(16093522-16093615)
chr2 (489-556)||(27386940-27387007)
chr2 (496-556)||(32623604-32623664)
[»] scaffold0281 (1 HSPs)
scaffold0281 (459-556)||(1839-1935)
[»] chr5 (2 HSPs)
chr5 (464-543)||(39176440-39176520)
chr5 (470-542)||(39435974-39436045)
[»] chr6 (4 HSPs)
chr6 (460-542)||(9548749-9548832)
chr6 (457-546)||(19566892-19566982)
chr6 (464-556)||(19769032-19769125)
chr6 (465-556)||(12987081-12987173)
[»] chr4 (5 HSPs)
chr4 (457-556)||(25126238-25126334)
chr4 (460-540)||(15706677-15706757)
chr4 (415-556)||(19611924-19612062)
chr4 (464-542)||(11153812-11153890)
chr4 (495-556)||(23974153-23974213)
[»] scaffold0088 (1 HSPs)
scaffold0088 (457-551)||(35497-35591)
[»] chr7 (4 HSPs)
chr7 (457-542)||(32945341-32945424)
chr7 (464-556)||(18147606-18147699)
chr7 (457-498)||(16250380-16250421)
chr7 (339-371)||(22947653-22947685)
[»] scaffold0094 (1 HSPs)
scaffold0094 (460-532)||(48250-48321)
[»] scaffold0019 (1 HSPs)
scaffold0019 (457-541)||(182934-183019)
[»] scaffold0323 (1 HSPs)
scaffold0323 (460-522)||(16241-16303)


Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 42147006 - 42147470
Alignment:
Q  19 caaacaacataaattggttcatgtaattaccttttcaaaccatgaacacaaaatataacattgtgaattaattttgtatcctaatcaattaatcgaagac 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42147006 caaacaacataaattggttcatgtaattaccttttcacaccatgaacacaaaatataacattgtgaattaattttgtatcctgatcaattaatcgaagac 42147105  T
Q  119 taaatactaatttgattttataactagtcaaagattgaattcac------gactcttttattcataaagcaacaagacttggttaacaagagatctcata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  42147106 taaatactaatttgattttataactagtcaaagattgaattcaccgtctggactcttttattcataaagcaacaagactcggttaacaagatatctcata 42147205  T
Q  213 cacaaatttatcttatccaagattacgaaatcaaagtgcagaaatacatcattatataaccgtatagacatcgatatgcacaaattaagcttattctct- 311  Q
    |||||||||||||||||||||||||| ||||| ||||||||  |||||||||||||| ||| ||||||||||||||||||||    |||||||||||||     
T  42147206 cacaaatttatcttatccaagattacaaaatcgaagtgcagtgatacatcattatatgaccatatagacatcgatatgcaca----aagcttattctctg 42147301  T
Q  312 ---nnnnnnntgcataaaactcaattttaattaaatcattaatcacaaatcaaacatataattgcgacaatataaaggacacagatataacatgaattca 408  Q
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  || |||||||||||||    
T  42147302 aaaaaaaaaatgcataaaactcaattttaattaaatcattaatcacaaatcaaacatataattgcgacgatataaaggacacgaatgtaacatgaattca 42147401  T
Q  409 tt-aaagatcatgaaaaacaatggaaaataaaaaacccttcacaaccc--ttgttcatacaacccttatg 475  Q
    || |||||||||||||||||||| ||||||||||| ||||||| ||||   |||||||||||| ||||||    
T  42147402 ttaaaagatcatgaaaaacaatgaaaaataaaaaa-ccttcactacccatatgttcatacaacacttatg 42147470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 438 - 556
Target Start/End: Original strand, 17290595 - 17290715
Alignment:
Q  438 aaaaacccttcacaacccttgt--tcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaa 535  Q
    |||||||||||||||||| | |  |||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||| ||||  |||||| ||    
T  17290595 aaaaacccttcacaacccatatattcatacaacccttatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaa 17290694  T
Q  536 atctctccctaggttcatctc 556  Q
    ||||||| |||||||| ||||    
T  17290695 atctctctctaggttcttctc 17290715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 494 - 556
Target Start/End: Original strand, 40391403 - 40391465
Alignment:
Q  494 cttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    ||||||||||||||||||||||||||| ||||||| | |||||||||||  ||||||| ||||    
T  40391403 cttacctctagttttgcgaaattgatggttttctaagttgaaatctctctttaggttcttctc 40391465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 24795916 - 24795948
Alignment:
Q  332 attttaattaaatcattaatcacaaatcaaaca 364  Q
    ||||| |||||||||||||||||||||||||||    
T  24795916 attttcattaaatcattaatcacaaatcaaaca 24795948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 24178320 - 24178038
Alignment:
Q  19 caaacaacataaattggttcatgtaattaccttttcaaaccatgaacacaaaatataacattgtgaattaattttgtatcctaatcaattaatcgaagac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24178320 caaacaacataaattggttcatgtaattaccttttcaaaccatgaacacaaaatataacattgtgaattaattttgtatcctaatcaattaattgaagac 24178221  T
Q  119 taaatactaatttgattttataactagtcaaagattgaattcac------gactc-ttttattcataaagcaacaagacttggttaacaagagatctcat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||      ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  24178220 taaatactaatttgattttataactagtcaaagattgaattcaccgtttggactctttttattcataaagcaacaagactcggttaacaagagatctcat 24178121  T
Q  212 acacaaatttatcttatcc--aagattacgaaatcaaagtgcagaaatacatcattatataaccgtatagacatcgatatgca 292  Q
    |||||||| ||||||||||  |||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||||    
T  24178120 acacaaatgtatcttatcctaaagattacgaaatcgaaatgcagaaatacatcattatataaccatatggacatcgatatgca 24178038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 432 - 542
Target Start/End: Complemental strand, 18534547 - 18534437
Alignment:
Q  432 aaaataaaaaacccttcacaaccct-tgttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacg 530  Q
    |||| |||||||||||||| ||| | ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| |    
T  18534547 aaaaaaaaaaacccttcactaccatatgttcatacaatccttatggtgaatagagactcccc-cttacctctagttttgcgaaattgatgatttcctatg 18534449  T
Q  531 gtgaaatctctc 542  Q
    ||  ||||||||    
T  18534448 gttgaatctctc 18534437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 440 - 559
Target Start/End: Complemental strand, 18705642 - 18705523
Alignment:
Q  440 aaacccttcacaaccctt--gttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaat 537  Q
    ||||||||||| ||||||  |||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||||  || ||||||||    
T  18705642 aaacccttcactacccttatgttcatacaacc-ttatggtaaatagagactcccc-catacctctagttttacgaaattgatgatttcatatggtgaaat 18705545  T
Q  538 ctctccctaggttcatctcact 559  Q
    ||||| ||| |||| |||||||    
T  18705544 ctctctctacgttcttctcact 18705523  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 385 - 550
Target Start/End: Original strand, 3592991 - 3593157
Alignment:
Q  385 ggacacagatataacatgaattcattaaa-gatcatgaaaaacaatggaaaataaaaaacccttcacaacccttgt--tcatacaacccttatggtaaat 481  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||| |||| | ||| |||| ||| || | | |  |||||||||||||||| | |||    
T  3592991 ggacacaaatttaacatgaattcattaaaagatcatgaaaaacaatgtaaaacataaa-ccctgcactacacgtatgatcatacaacccttatgatgaat 3593089  T
Q  482 agagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggtt 550  Q
    |||||||| || ||||||||||| |||||  |||||||||||| |||||| ||||||||||| ||||||    
T  3593090 agagactctccccttacctctag-tttgccgaattgatgatttcctacggagaaatctctccataggtt 3593157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 383 - 492
Target Start/End: Complemental strand, 24178038 - 24177927
Alignment:
Q  383 aaggacacagatataacatgaattcattaaa-gatcatgaaaaacaatggaaaataaaaaacccttcacaaccc--ttgttcatacaacccttatggtaa 479  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||   |||||||| || ||||||||| |    
T  24178038 aaggacacgaatataacatgaattcattaaaagatcatgaaaaacaatggaaaata-aaaacccttcactacccatatgttcatagaatccttatggtga 24177940  T
Q  480 atagagactcccc 492  Q
    |||||||||||||    
T  24177939 atagagactcccc 24177927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 30993338 - 30993244
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttc 551  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||| ||||||| ||  ||| ||||| |||||| | ||||||    
T  30993338 tgttcatacaacccttatggtgaatagagactccccccttacctctagtttggagaatttgatgaattcatacagtgaagtctctctccaggttc 30993244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 499 - 556
Target Start/End: Original strand, 3290666 - 3290723
Alignment:
Q  499 ctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||||||||||||||||||||||||| ||||||| ||||| ||| |||||||| ||||    
T  3290666 ctctagttttgcgaaattgatgatttcctacggttaaatccctctctaggttcttctc 3290723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 528
Target Start/End: Original strand, 3483623 - 3483690
Alignment:
Q  460 tcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttcta 528  Q
    |||||||||||||||| |||| ||||||||| | |||||||||||||| | ||| ||||||| ||||||    
T  3483623 tcatacaacccttatg-taaacagagactcctcccttacctctagtttggagaatttgatgaatttcta 3483690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 464 - 556
Target Start/End: Complemental strand, 15777433 - 15777344
Alignment:
Q  464 acaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||||||||||| | |||| | ||||||| |||||||||||||| || ||| |||| | || ||||||||||||||||| |||||||| ||||    
T  15777433 acaacccttatgatgaataaa-actcccc-cttacctctagttt-gcaaaagtgataaattcctacggtgaaatctctctctaggttcttctc 15777344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 457 - 559
Target Start/End: Complemental strand, 18513921 - 18513819
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    ||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||||| ||| | | ||||||||| |||||||| ||||    
T  18513921 tgttcatacaacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttcttctc 18513822  T
Q  557 act 559  Q
    |||    
T  18513821 act 18513819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 542
Target Start/End: Complemental strand, 23632266 - 23632181
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctc 542  Q
    ||||||| |||||| |||| |||||||| ||||||| ||||||||||||||| |||| ||||||| || |||||||||||||||||    
T  23632266 tgttcatgcaacccatatgctaaatagaaactccccccttacctctagtttttcgaatttgatgagttcctacggtgaaatctctc 23632181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 529
Target Start/End: Complemental strand, 9131777 - 9131711
Alignment:
Q  462 atacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctac 529  Q
    ||||||| |||||||| |||||||||||| | |||||||| |||||||||||||||||||||| ||||    
T  9131777 atacaacacttatggtgaatagagactcctc-cttacctcgagttttgcgaaattgatgatttcctac 9131711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 464 - 542
Target Start/End: Original strand, 12786235 - 12786314
Alignment:
Q  464 acaacccttatggtaaatagagactcccctc-ttacctctagttttgcgaaattgatgattttctacggtgaaatctctc 542  Q
    |||||||||||| | |||||||||||||| | ||||||||||||| | ||| ||||||| || |||||||||||||||||    
T  12786235 acaacccttatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctc 12786314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 462 - 556
Target Start/End: Original strand, 16093522 - 16093615
Alignment:
Q  462 atacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||| ||||||| |||||||||||| |||||||| ||||    
T  16093522 atacaacccttatggtgaatagagactcccctcttacctctag-tttgcaaaagtgatgaatttctacagtgaaatctctctctaggttcctctc 16093615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 489 - 556
Target Start/End: Complemental strand, 27387007 - 27386940
Alignment:
Q  489 cccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  27387007 cccctcttacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttcttctc 27386940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 32623664 - 32623604
Alignment:
Q  496 tacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||| ||||    
T  32623664 tacctctagttttgcaaaattgatgattttctacggtgaaatctctctctagattcttctc 32623604  T

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Target: scaffold0281 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 459 - 556
Target Start/End: Original strand, 1839 - 1935
Alignment:
Q  459 ttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| |||||  |||||||||||| |||||||||||||||||  ||||||| ||||    
T  1839 ttcatacaacccttatggtaaatagagactccccccatacctctag-tttgcagaattgatgatttcctacggtgaaatctctctgtaggttcttctc 1935  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 464 - 543
Target Start/End: Original strand, 39176440 - 39176520
Alignment:
Q  464 acaacccttatggtaaatagagactcccctc-ttacctctagttttgcgaaattgatgattttctacggtgaaatctctcc 543  Q
    |||||||||||| | |||||||||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39176440 acaacccttatgatgaatagagacttcccccattacctctagttttgcgaaattgatgattttctatggtgaaatctctcc 39176520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 542
Target Start/End: Complemental strand, 39436045 - 39435974
Alignment:
Q  470 cttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctc 542  Q
    |||||||| |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  39436045 cttatggtgaatagagactcccc-cttacctctagttttgtgaaattgatgatttcctacggtgaaatctctc 39435974  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 542
Target Start/End: Original strand, 9548749 - 9548832
Alignment:
Q  460 tcatacaacccttatggtaaatagagactcccctcttacctctagtttt-gcgaaattgatgattttctacggtgaaatctctc 542  Q
    |||||||||||||||| | || ||||||||||| |||| |||||||||| |||||||||||||||| |||||||||||||||||    
T  9548749 tcatacaacccttatgatgaacagagactccccccttatctctagtttttgcgaaattgatgatttcctacggtgaaatctctc 9548832  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 19566982 - 19566892
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagactcccctc-ttacctctagttttgcgaaattgatgattttctacggtgaaatctctcccta 546  Q
    |||||| |||||||||||||| |||| ||||||||| | || |||||||||||||  ||| ||||| ||||||||||  ||||||||||||    
T  19566982 tgttcacacaacccttatggtgaatacagactcccccccttgcctctagttttgctgaatagatgaatttctacggttgaatctctcccta 19566892  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 556
Target Start/End: Complemental strand, 19769125 - 19769032
Alignment:
Q  464 acaacccttatggtaaatagagactcccctc-ttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||||||||||| | |||||||||||||| | ||||||||||||    ||| ||||||| || ||||||||||||||||| |||| ||| ||||    
T  19769125 acaacccttatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctctctagattcttctc 19769032  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 556
Target Start/End: Complemental strand, 12987173 - 12987081
Alignment:
Q  465 caacccttatggtaaatagagactcccctct-tacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||| |||| ||| |||||||||||||| |  || ||||||||||  |||||||||||||   |||||||||||||||| |||||||| ||||    
T  12987173 caactcttacggtgaatagagactcccccccatatctctagttttttgaaattgatgattccatacggtgaaatctctctctaggttcttctc 12987081  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 457 - 556
Target Start/End: Complemental strand, 25126334 - 25126238
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||| ||||||||||||||   |||||||||||||| | ||||||||||||||||||||||||||||| ||||| | |||| |||| |||||||| ||||    
T  25126334 tgtttatacaacccttatg---aatagagactccccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttcttctc 25126238  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 460 - 540
Target Start/End: Original strand, 15706677 - 15706757
Alignment:
Q  460 tcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctc 540  Q
    ||||||||| |||| ||| ||||||||||||||  ||||||||||||||||||||||||||||||  |||| |||||||||    
T  15706677 tcatacaactcttacggtgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgttgaaatctc 15706757  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 415 - 556
Target Start/End: Complemental strand, 19612062 - 19611924
Alignment:
Q  415 atcatgaaaaacaatggaaaataaaaaacccttcacaaccctt--gttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcga 512  Q
    ||||||||||||||||||||| ||||   ||||||| |||  |  |||||| ||||| ||||| | |||||||||||||| | |||||||| ||||||||    
T  19612062 atcatgaaaaacaatggaaaacaaaa---ccttcactacctatatgttcatgcaacc-ttatg-tgaatagagactccccccatacctctaattttgcga 19611968  T
Q  513 aattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||||||||||  ||||| ||||||||||| |||||||| ||||    
T  19611967 aattgatgattccctacgatgaaatctctctctaggttcttctc 19611924  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 542
Target Start/End: Original strand, 11153812 - 11153890
Alignment:
Q  464 acaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctc 542  Q
    |||||||||||| | ||||||||||||||  ||||||||||||    ||| ||||||| ||  ||||||||||||||||    
T  11153812 acaacccttatgatgaatagagactcccccattacctctagttcgaagaatttgatgaattcatacggtgaaatctctc 11153890  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 556
Target Start/End: Original strand, 23974153 - 23974213
Alignment:
Q  495 ttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    ||||||||||||| ||  |||||||||||| |||||||||||||| || |||||||| ||||    
T  23974153 ttacctctagttt-gcagaattgatgatttcctacggtgaaatctttctctaggttcttctc 23974213  T

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Target: scaffold0088 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 35591 - 35497
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttc 551  Q
    |||| |||||||||||| | | |||||||||||||| ||||||||||||||  |||| ||||||| || ||||||||||||||||| ||| ||||    
T  35591 tgttgatacaacccttacgctgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctctctacgttc 35497  T

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Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 457 - 542
Target Start/End: Original strand, 32945341 - 32945424
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctctc 542  Q
    ||||||||||||| ||||| | |||| | ||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  32945341 tgttcatacaacc-ttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctc 32945424  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 556
Target Start/End: Complemental strand, 18147699 - 18147606
Alignment:
Q  464 acaacccttatggtaaatagagactcccctc-ttacctctagttttgcgaaattgatgattttctacggtgaaatctctccctaggttcatctc 556  Q
    |||||||||||| | |||||||||||||| | ||||||||||||  | ||| ||||||| || |||||| |||||||||| |||| ||| ||||    
T  18147699 acaacccttatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctctctagattcttctc 18147606  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Complemental strand, 16250421 - 16250380
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagactcccctcttac 498  Q
    ||||||||||||||||||| | |||||||||||||| |||||    
T  16250421 tgttcatacaacccttatgatgaatagagactccccccttac 16250380  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 22947653 - 22947685
Alignment:
Q  339 ttaaatcattaatcacaaatcaaacatataatt 371  Q
    |||||||||||||||||||||||||| ||||||    
T  22947653 ttaaatcattaatcacaaatcaaacagataatt 22947685  T

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Target: scaffold0094 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 532
Target Start/End: Original strand, 48250 - 48321
Alignment:
Q  460 tcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgattttctacggt 532  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||||| || ||||||||| || |||||||    
T  48250 tcatacaatccttatggtgaatagagactccccccttacctctagttttccg-aattgatgaattcctacggt 48321  T

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Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 457 - 541
Target Start/End: Original strand, 182934 - 183019
Alignment:
Q  457 tgttcatacaacccttatggtaaatagagact-cccctcttacctctagttttgcgaaattgatgattttctacggtgaaatctct 541  Q
    ||||||| |||||| |||| |||||||| | | |||| ||||||||||||||   ||| |||||||||||||||||||||||||||    
T  182934 tgttcatgcaacccatatgctaaatagaaatttccccccttacctctagtttgcagaatttgatgattttctacggtgaaatctct 183019  T

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Target: scaffold0323 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 16241 - 16303
Alignment:
Q  460 tcatacaacccttatggtaaatagagactcccctcttacctctagttttgcgaaattgatgat 522  Q
    ||||||||||||| |||| |||||||||| ||| |||||||||||||| | ||| ||||||||    
T  16241 tcatacaacccttttggtgaatagagacttcccccttacctctagtttagagaatttgatgat 16303  T

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