View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_high_7 (Length: 491)
Name: NF17001_high_7
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 9866940 - 9866463
Alignment:
| Q |
1 |
gcattcttatagtggcttttataatgttgacatgcaatataaatttcatatctatgaaattattgtgttgtattgtactttttaaggtttattttttcta |
100 |
Q |
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| T |
9866940 |
gcattcttatagtggcttttataatgttgacatgcaatataaatttcatatctatgaaattattgtgttgtgttgtactttttaaggtttattttttcta |
9866841 |
T |
|
| Q |
101 |
tcttgttttacaaaaggtttgggagaagcatgtgcaatggtgctgaatctcgaggaaatataaatggtgaggtagtgatatcaaaggttgagaattgcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9866840 |
tcttgttttacaaaaggtttgggagaagcatgtgcaatggtgctgaatctcgaggaaatataaatggtgaggtagtgatatcaaaggttgagaattgcca |
9866741 |
T |
|
| Q |
201 |
tgaagaaagaatgcgaaatacagaaggtagtgaaagagcttgcaattgtggcactggtcttcttcaacgtatatatcttcatcttagtactcttcttcct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9866740 |
tgaagaaagaatgcgaaatacagaaggtagtgaaagagcttgcaattgtggcactggtcttcttcaacgtatatatcttcatcttagtactcttcttcct |
9866641 |
T |
|
| Q |
301 |
accatttcagtatctgaggttagtaatc----cctatctatccgtctatctatctgtctgtctgtccgtgtttttgttatgtggactaagcaaagttttt |
396 |
Q |
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|||||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |
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| T |
9866640 |
accatttcagtatccgaggttagtaatctctatctatctatctgtctgtctatctgtctgtctgttcgtgtttttgttatgtggactgagcaaatttttt |
9866541 |
T |
|
| Q |
397 |
ctcatgttttctaaacttgtttgctgggtttaaagaacattttgaaaacctaacatgatatcatataatgaactaactt |
475 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9866540 |
ctcatgttttctaaacttgtttgttgggttt-aagaacattttgaaaacctaacataatatcatataatgaactaactt |
9866463 |
T |
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