View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_10 (Length: 395)
Name: NF17001_low_10
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Complemental strand, 43012792 - 43012426
Alignment:
| Q |
11 |
cagagaagggactaatgtgaagaagagaaagaacaaaatggaagaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaa |
110 |
Q |
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| T |
43012792 |
cagagatgggactaatgtgaagaagagaaagaacaaaatggaagaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaa |
43012693 |
T |
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| Q |
111 |
aatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaagcagtgaatgacaccaagaagcaggaactcgtggtttatagcagaaacaagc |
210 |
Q |
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| T |
43012692 |
aatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaagcagtgaatgacaccaagaagcaggaactcgtggtttatagcagaaacaagc |
43012593 |
T |
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| Q |
211 |
caaaactagggattgatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaaccttttttcaatacacagttcagttttccacttgct |
310 |
Q |
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| T |
43012592 |
caaaactagggatttatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaaccttttttcaatacacagttcagttttccacttgct |
43012493 |
T |
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| Q |
311 |
ttgatatataggtgttagttagtttagttattaatttgatgttatatacttatatatgttaccttgt |
377 |
Q |
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| T |
43012492 |
ttgatatataggtgttagttagtttagttattaatttgatgttatatacttatatatgttaccttgt |
43012426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 108 - 377
Target Start/End: Complemental strand, 18220920 - 18220650
Alignment:
| Q |
108 |
aaaaatcaacaaggtgtgagtagtagcagcggagccaaaaaatctaagaaagcagtgaatgacaccaagaagcaggaactcgtggtttatagcagaaaca |
207 |
Q |
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| T |
18220920 |
aaaaatcaccaaggtgtgagtagtggcagtggggataaaaagtctgagaaagcagtgaatgacaccaagaagcaggaacttgtggtttatagaagaaaca |
18220821 |
T |
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| Q |
208 |
agccaaaactagggattgatagatgggctgctgagaggtaaatggttatttgtattcatagatgtaacctt-ttttcaatacacagttcagttttccact |
306 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||||||||||||| |
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| T |
18220820 |
agccaaaaatatggattgatagatgggctgctgagaggtaaatggttatttgtatttaaagatgtaacctttttttcagtacacagttcagttttccact |
18220721 |
T |
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| Q |
307 |
tgctttgatatataggtgttagttagtttagttattaatttgatgttatatacttatatatgttaccttgt |
377 |
Q |
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| T |
18220720 |
tggtttaataggtgttagttagttagtttagttattaatttgatgttatatacttatatatgttatcttgt |
18220650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 18221030 - 18220918
Alignment:
| Q |
46 |
aaatggaagaagctgtcaaggtagctcagtttgaggtacagaggacaactcgtcaatgcaacaaaaatcaacaaggtgtgagtagtagcagcggagccaa |
145 |
Q |
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| T |
18221030 |
aaatggaagaagttgtgaaggtagctccttttgaggtacagagggtgactcgtcaatgcaacaaaaatcaacaaggtgtaagtagtagcagcgtggccaa |
18220931 |
T |
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| Q |
146 |
aaaatctaagaaa |
158 |
Q |
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||| ||||||||| |
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| T |
18220930 |
aaagtctaagaaa |
18220918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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