View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17001_low_13 (Length: 323)
Name: NF17001_low_13
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_13 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 50556465 - 50556774
Alignment:
| Q |
14 |
aagtattatcccatcatcaattcaaactcaccaaaatcaacttttccatcaaagttcaaatcaacaaccttaaccatcctttcaatagtattcatatccc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50556465 |
aagtattatcccatcatcaattcaaactcaccaaaatcaacttttccatcaaagttcaaatcaacaaccttaaccatcctttcaattgtattcatatccc |
50556564 |
T |
|
| Q |
114 |
aacctttatccaaacccaagcaatcaagcactctcttcaactccattgcatctatatatccatcaccatcctcatcaaatattttgaaagcttcaagcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
50556565 |
aacctttatccaaacccaagcaatcaagcactctcttcaactccattgcatctatatatccatcgccatcctcatcaaatattttgaaagcttcaagcaa |
50556664 |
T |
|
| Q |
214 |
taactcacttctctttggcatatcttccaattcaccaagcacctcttcaacaaccacttcttcttcatcatcatcttgaaaagccttgttttccttgtga |
313 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50556665 |
taactcacttctctttgacatatcttccaattcaccaagcacctcttcaacaaccacttcttcttcatcatcatcttgaaaagccttgttttccttgtga |
50556764 |
T |
|
| Q |
314 |
tcagaaccat |
323 |
Q |
| |
|
|||||||||| |
|
|
| T |
50556765 |
tcagaaccat |
50556774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 50857885 - 50857576
Alignment:
| Q |
14 |
aagtattatcccatcatcaattcaaactcaccaaaatcaacttttccatcaaagttcaaatcaacaaccttaaccatcctttcaatagtattcatatccc |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50857885 |
aagtactatcccatcatcaattcaaactcaccggaatcaacttttccacataagctcaaaacaacaaccttaaccatcctttcaattgtattcatatccc |
50857786 |
T |
|
| Q |
114 |
aacctttatccaaacccaagcaatcaagcactctcttcaactccattgcatctatatatccatcaccatcctcatcaaatattttgaaagcttcaagcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50857785 |
aacctttatccaaacccaagcaatcaagcactctcttcaactccattgcatctatatatccatcaccatcctcatcaaatattttgaaagcttcaagcaa |
50857686 |
T |
|
| Q |
214 |
taactcacttctctttggcatatcttccaattcaccaagcacctcttcaacaaccacttcttcttcatcatcatcttgaaaagccttgttttccttgtga |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50857685 |
taactcacttctctttgacatatcttccaattcaccaagcacctcttcaacaaccacttcttcttcatcatcatcttgaaaagccttgttttcattgtga |
50857586 |
T |
|
| Q |
314 |
tcagaaccat |
323 |
Q |
| |
|
|||||||||| |
|
|
| T |
50857585 |
tcagaaccat |
50857576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 50817979 - 50818288
Alignment:
| Q |
14 |
aagtattatcccatcatcaattcaaactcaccaaaatcaacttttccatcaaagttcaaatcaacaaccttaaccatcctttcaatagtattcatatccc |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
50817979 |
aagtactatcccatcatcaattcaaactcaccggaatcaacttttccacataagctcaaaacaacaaccttaaccatcctttcaattgtattcatatccc |
50818078 |
T |
|
| Q |
114 |
aacctttatccaaacccaagcaatcaagcactctcttcaactccattgcatctatatatccatcaccatcctcatcaaatattttgaaagcttcaagcaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50818079 |
aacctttatccaaacccaagcaatcaggcactctcttcaactccattgcatctatatatccatcaccatcctcatcaaatattttgaaagcttcaagcaa |
50818178 |
T |
|
| Q |
214 |
taactcacttctctttggcatatcttccaattcaccaagcacctcttcaacaaccacttcttcttcatcatcatcttgaaaagccttgttttccttgtga |
313 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50818179 |
taactcacttctctttgacatatcttccaattcaccaagcacctcttcaacaaccacttcttcttcatcatcatcttgaaaagccttgttttctttgtga |
50818278 |
T |
|
| Q |
314 |
tcagaaccat |
323 |
Q |
| |
|
|||||||||| |
|
|
| T |
50818279 |
tcagaaccat |
50818288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University