View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_15 (Length: 300)
Name: NF17001_low_15
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 155 - 282
Target Start/End: Original strand, 6933274 - 6933401
Alignment:
| Q |
155 |
gaggttttaccccaatttaagaacaaaccctaacaccaattttgcaggtagtgggatttagaaacacaccgtcactcgtaaaccttcgcccaccatcact |
254 |
Q |
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| T |
6933274 |
gaggttttaccccaatttaagaacaaaccctaacaccaattttgcaggtagtgggatttagaaacacaccgtcactcgtaaaccttcgcccaccatcact |
6933373 |
T |
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| Q |
255 |
ctcctatgacatttaattaattacaggt |
282 |
Q |
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| T |
6933374 |
ctcctatgacatttaattaattacaggt |
6933401 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 238
Target Start/End: Original strand, 12180364 - 12180443
Alignment:
| Q |
159 |
ttttaccccaatttaagaacaaaccctaacaccaattttgcaggtagtgggatttagaaacacaccgtcactcgtaaacc |
238 |
Q |
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| T |
12180364 |
tttttccccaatttaagaacaaaccctaactccaatttagcataaaattatatttagaaacacaccgtcactcgtaaacc |
12180443 |
T |
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