View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_16 (Length: 299)
Name: NF17001_low_16
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 35 - 286
Target Start/End: Original strand, 16111303 - 16111554
Alignment:
| Q |
35 |
tatactctgtaacaagaagataaatcatcaataatttatcgtattgtaagtatctctatcaacttcattttattttgctctgtttcttcactgaattata |
134 |
Q |
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| T |
16111303 |
tatactctgtaacaagaagataaatcatcaataatttatcgtattgtaagtatctctatcaacttcattttattttgctctatttcttcactgaattata |
16111402 |
T |
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| Q |
135 |
ttacaacaaataaaaaacatgtaatgttagagacttaaacctcataaatctattatggatcgattgcatgcaatgtttgacctatgaatttttcaattga |
234 |
Q |
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| T |
16111403 |
ttacaacaaataaaaaacatataatgttagattcttaaacctcataaatctattatggatcgattgcatgcaatgtttgacctatgaatatttcaattga |
16111502 |
T |
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| Q |
235 |
atcttgtaagaatcttaacttgaacaaattttattttcatgctttttgttat |
286 |
Q |
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| T |
16111503 |
atcttgtaagaatcttaacttgaacaaattttattttcatgttttttgttat |
16111554 |
T |
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Back To:
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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 12264530 - 12264587
Alignment:
| Q |
203 |
tgcaatgtttgacctatgaatttttcaattgaatcttgtaagaatcttaacttgaaca |
260 |
Q |
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| T |
12264530 |
tgcaatgtttgacatatgaatttttcaattgaatcttgaaagaaccttaacttgaaca |
12264587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 39480036 - 39479924
Alignment:
| Q |
161 |
ttagagacttaaacctcataaatctatt-atggatcgattgcatgcaatgtttgacctatgaatttttcaattgaatcttgtaagaa--tcttaacttga |
257 |
Q |
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| T |
39480036 |
ttagagacttagacctcataaatctgtttatcgatcgattgtaag-----tttgacctatgaatctttcaattgaatcatgtaagaatctcttaacttga |
39479942 |
T |
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| Q |
258 |
acaaattttattttcatg |
275 |
Q |
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| T |
39479941 |
aacaattttattttcatg |
39479924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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