View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_17 (Length: 270)
Name: NF17001_low_17
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 40277474 - 40277219
Alignment:
| Q |
1 |
tcatcaaagatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttcatcaaatcttatattcaaggagtcag |
100 |
Q |
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| T |
40277474 |
tcatcaaagatcacaagtattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttcatcaaatctaatattcaaggagtcag |
40277375 |
T |
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| Q |
101 |
caatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40277374 |
caatttcatcttgcattgctgtgatatttgggtttttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgc |
40277275 |
T |
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| Q |
201 |
tttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcatagaac |
256 |
Q |
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| T |
40277274 |
tttcaccaatgctgttttaccagatccctgcttaccatacaagccaatcatagaac |
40277219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40376628 - 40376396
Alignment:
| Q |
1 |
tcatcaaagatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatattca |
91 |
Q |
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| T |
40376628 |
tcatcaaagatcacaagtataggatgatccatattttctattgtggataatatttttcttgctctttcagcttcactgtttctatcaaatcttatattca |
40376529 |
T |
|
| Q |
92 |
aggagtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctc |
191 |
Q |
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| T |
40376528 |
aggagtcagcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatatttaaaaacatgactttctc |
40376429 |
T |
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| Q |
192 |
acccattgctttcaccaatgctgttttaccaga |
224 |
Q |
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| T |
40376428 |
acccattactctcaccaatgtagttttaccaga |
40376396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40386873 - 40386641
Alignment:
| Q |
1 |
tcatcaaagatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatattca |
91 |
Q |
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||||||||||| ||||| |||||||||||||||| |||||| ||||| ||||| |||||||||| | |||||| |||||||||||||||| |
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| T |
40386873 |
tcatcaaagataacaagtattggacgatccatatcttctattgtggataatattcttcttgctcttccagcttcactgtttctatcaaatcttatattca |
40386774 |
T |
|
| Q |
92 |
aggagtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctc |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||| ||||| | |||||||| |
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| T |
40386773 |
aggagtcagcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatattcaaatattggactttctg |
40386674 |
T |
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| Q |
192 |
acccattgctttcaccaatgctgttttaccaga |
224 |
Q |
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||||| |||||||||| | ||||||||||| |
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| T |
40386673 |
ttccattactttcaccaacgtagttttaccaga |
40386641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 40333595 - 40333363
Alignment:
| Q |
1 |
tcatcaaagatcacaagcattggacgatccatattttctatggtggaagatattagtcttgctctttcggcttca---------tcaaatcttatattca |
91 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |||||| ||||| ||||| |||||||||| | | |||| || ||||||||||||| |
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| T |
40333595 |
tcatcaaagatcacaagtattggacgatccatatcttctattgtggataatatttttcttgctcttccagtttcactgtttctatctaatcttatattca |
40333496 |
T |
|
| Q |
92 |
aggagtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctc |
191 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||||| ||||| | |||||||| |
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| T |
40333495 |
agaagtcagcaatttcatcttgcattgctgtgatatttgggtttttggtcacattgacaaataaaatctcatcaaaaatattcaaatattggactttctg |
40333396 |
T |
|
| Q |
192 |
acccattgctttcaccaatgctgttttaccaga |
224 |
Q |
| |
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||||| |||||||||| | ||||||||||| |
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| T |
40333395 |
ttccattactttcaccaacgtagttttaccaga |
40333363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 254
Target Start/End: Original strand, 40598208 - 40598367
Alignment:
| Q |
95 |
agtcagcaatttcatcttgcattgctgtgatatttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacc |
194 |
Q |
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||||||||||||| |||||||| | | ||||||| || ||| ||||| || ||||||||| ||||||||||| |||| || ||| ||||||||||| |
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| T |
40598208 |
agtcagcaatttcttcttgcatagttctgatattcaggttttgcgtcaccgtggcaaataaaacctcatgaaaaatctttagatgcttaactttctcacc |
40598307 |
T |
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| Q |
195 |
cattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaatcataga |
254 |
Q |
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||||||||| |||| ||||| |||||||| |||| |||||||||| ||||||||||| |
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| T |
40598308 |
cattgcttttgccaacgctgtcttaccagagcccttgctaccatacaatccaatcataga |
40598367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 40257607 - 40257690
Alignment:
| Q |
165 |
aaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccagatccctgcttaccatacaacccaat |
248 |
Q |
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|||||| |||||||||||| |||||||||| | |||||||||||| |||||||||||| |||| ||| ||||| || ||||| |
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| T |
40257607 |
aaaaatctttaaatacttggctttctcaccaactgctttcaccaactttgttttaccagagcccttcttcccatataatccaat |
40257690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 40325898 - 40325801
Alignment:
| Q |
127 |
tttgggattttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccaga |
224 |
Q |
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|||||| ||| || |||| ||| |||||||| ||||| ||||| || | |||||| |||||||| ||| ||||||||| |||| |||||||||||| |
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| T |
40325898 |
tttgggttttgggacacattgataaataaaacttcatcaaaaaacttggagtacttggctttctcagccactgctttcactaatgttgttttaccaga |
40325801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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