View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_19 (Length: 237)
Name: NF17001_low_19
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 27091302 - 27091148
Alignment:
| Q |
10 |
acagactgaagggaccaaaacagataacggagaaatatttaaggggctcaaacagagtttttattatttaagggaccaaaacgatgctaaaaataaagat |
109 |
Q |
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| T |
27091302 |
acagactgaagggaccaaaacagataacggagaaatatttaagggattcaaacaaagtttttattatttaagggaccaaaacgatgctaaaaataaagat |
27091203 |
T |
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| Q |
110 |
aagggactaaaacaacattttagccaataataaacatgtaatgtaacaacaggac |
164 |
Q |
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| T |
27091202 |
aagggactaaaacaacattttagccaataataaacatgtaatgtaacaacaggac |
27091148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 20899607 - 20899532
Alignment:
| Q |
59 |
aaacagagtttttattatttaagggaccaaaacgatgctaaaaataaagataagggactaaaacaacattttagcc |
134 |
Q |
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| T |
20899607 |
aaacagactttttattacttaagggaccaaactgatactaaaaaacaagttaagggatcaaaacaacattttagcc |
20899532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 27091115 - 27091082
Alignment:
| Q |
194 |
tgaaataatgtgatcaacgaaattaaaatgatga |
227 |
Q |
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| T |
27091115 |
tgaaataatgtgatcaacgaaattaaaatgatga |
27091082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 27092112 - 27092158
Alignment:
| Q |
17 |
gaagggaccaaaacagataacggagaaatatttaaggggctcaaaca |
63 |
Q |
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| T |
27092112 |
gaagggaccaaaacagataacggaggaagacttaagggactcaaaca |
27092158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 12825865 - 12825746
Alignment:
| Q |
24 |
ccaaaacagataacggagaaatatttaaggggctcaaacagagtttttattatttaagggaccaaaacgatgctaaaaataaagataagggactaaaaca |
123 |
Q |
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| T |
12825865 |
ccaaaacagataatggagcaagacttaagagactcaaacggagtttttattatttaagggaccaatccgatactaaaaatatagttaagggaccaaaaga |
12825766 |
T |
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| Q |
124 |
acattttagccaataataaa |
143 |
Q |
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| T |
12825765 |
gtattttagccaaaaataaa |
12825746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 21612839 - 21612899
Alignment:
| Q |
34 |
taacggagaaatatttaaggggctcaaacagagtttttattatttaagggaccaaaacgat |
94 |
Q |
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| T |
21612839 |
taacggagacatatttaaaggactcaaacagactttttattaattatgggaccaaaacgat |
21612899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 39568466 - 39568534
Alignment:
| Q |
34 |
taacggagaaatatttaaggggctcaaacagagtttttattatttaagggaccaaaacgatgctaaaaa |
102 |
Q |
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| T |
39568466 |
taacggagacatatttaaaggactcaaacaaactttttattaattatggaaccaaaacgatactaaaaa |
39568534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 36194702 - 36194627
Alignment:
| Q |
59 |
aaacagagtttttattatttaagggaccaaaacgatgctaaaaataaagataagggactaaaacaacattttagcc |
134 |
Q |
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||||||| ||||||||| ||| |||||||||||||| || |||| ||| ||||||||||||| | ||||| |||| |
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| T |
36194702 |
aaacagactttttattacttatgggaccaaaacgatacttgaaatcaagttaagggactaaaagagcatttaagcc |
36194627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 39270762 - 39270839
Alignment:
| Q |
44 |
atatttaaggggctcaaacagagtttttattatttaagggaccaaaacgatgctaaaaataaagataagggactaaaa |
121 |
Q |
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|||||||| || ||||||| || ||||||||| ||| |||||||||||||| | ||||| ||| |||||||| |||| |
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| T |
39270762 |
atatttaaaggactcaaacggactttttattaattatgggaccaaaacgataccaaaaaataagttaagggacgaaaa |
39270839 |
T |
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