View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_2 (Length: 576)
Name: NF17001_low_2
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 50 - 386
Target Start/End: Original strand, 25650421 - 25650753
Alignment:
| Q |
50 |
ggaaaagtgttcggatttgcaagatttgtggga-taaaatatgtacgcagtcttgaatatcaacaagaatgtgtggttttgttcttataagatatgcgtc |
148 |
Q |
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| T |
25650421 |
ggaaaagtgttaggatttgcaagatttgtgggggtaaaatatgtacgcagtcttgaatatcaacaagaatgtgtggttttgttcttataagatatg-gcc |
25650519 |
T |
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| Q |
149 |
aatatctcaaaattttcaaaagaagatgatgagtcatgagatgtaaaggtgaagataaaagatggagggaaagaatcaacaatggatgcaattccaatnn |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25650520 |
aatatctcaaaattttcaaaagaagatgatgagtcatgagatgtaaaggtgaagataaaagatggagggaaagaatcaacaatggatgcaatttcaat-g |
25650618 |
T |
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| Q |
249 |
nnnnnacaatgtcttcgttaaggttgatgatgacttggagctaattttagtgcataatattaaataggtatctgagacttatagttctgttttctcggtc |
348 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25650619 |
gggggacaatgtcttcattaaggttgatgatgacttggagctaattttagtgcataatattaaataggtatctgagacttatagttctgttttctcgatc |
25650718 |
T |
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| Q |
349 |
ataatataattaattagccaaattaagctaatagagat |
386 |
Q |
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||||| |||| ||||||||||||||||||||||||| |
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| T |
25650719 |
ataat---attagttagccaaattaagctaatagagat |
25650753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 430 - 560
Target Start/End: Original strand, 25651862 - 25651988
Alignment:
| Q |
430 |
aaagtttcaaactacaaaacaacatcaatgcgcaatttaaataagtaactgaaatttatagatcaattttttcagtcataatataaccaaggctgagtct |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
25651862 |
aaagtttcaaactacaaaacaacatcaatgcgcaatttaaataagtaactgaaatttatagatcaattttttcaatcataatataaccaagg----gtct |
25651957 |
T |
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| Q |
530 |
ctaaattatatctcagttacccaagtaggta |
560 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
25651958 |
ctaaattatatctcagttacccaagtaggta |
25651988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 25651787 - 25651831
Alignment:
| Q |
381 |
agagatcagtttcagaaaactttaaccaccaatctaatagatgat |
425 |
Q |
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| T |
25651787 |
agagatcagtttcagaaaactttaaccaccaatctaatagatgat |
25651831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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