View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_20 (Length: 222)
Name: NF17001_low_20
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_20 |
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| [»] scaffold1961 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 15197179 - 15197371
Alignment:
| Q |
18 |
aacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15197179 |
aacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccaga |
15197278 |
T |
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| Q |
118 |
atgttccaagccttgtcaccatattcagcactcatgtccttgaaagcctctatcggaacatccttcttcctcttgatgttattcttcttcttc |
210 |
Q |
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| T |
15197279 |
atgttccaagccttgtcaccatattcagcactcatgtccttgaaagcctctataggaacatccttcttcttcttcatgttattcttcttcttc |
15197371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 15217597 - 15217789
Alignment:
| Q |
18 |
aacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15217597 |
aacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccaga |
15217696 |
T |
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| Q |
118 |
atgttccaagccttgtcaccatattcagcactcatgtccttgaaagcctctatcggaacatccttcttcctcttgatgttattcttcttcttc |
210 |
Q |
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| T |
15217697 |
atgttccaagccttgtcaccatattcagcactcatgtccttgaaagcctctataggaacatccttcttcttcttcatgttattcttcttcttc |
15217789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 1103 - 1207
Alignment:
| Q |
18 |
aacacaaataagaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccaga |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1103 |
aacacaaatgagaatgatgagaaagaacctgtaaagctcttaaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccaga |
1202 |
T |
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| Q |
118 |
atgtt |
122 |
Q |
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||||| |
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| T |
1203 |
atgtt |
1207 |
T |
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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 14752092 - 14752205
Alignment:
| Q |
29 |
gaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccagaatgttccaagc |
128 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||| | |||| |||||||||||||||| || ||| ||||||||| ||||||||||||| |
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| T |
14752092 |
gaatgatgagaaagtacctgtgaagctcttcaaaactgagacca---ctagtgttgtgattgtatatctgatgaaatgcatgttcaagaatgttccaagt |
14752188 |
T |
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| Q |
129 |
cttgtcaccatattcag |
145 |
Q |
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| T |
14752189 |
cttgtcaccatattcag |
14752205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 14760225 - 14760341
Alignment:
| Q |
28 |
agaatgatgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccagaatgttccaag |
127 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| | |||||||||| ||||| |||||||||| |
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| T |
14760225 |
agaatcatgagaaagaacctgtaaagctcttcaaaactg---atattcctaacgttgtggttgtataagtcatgaattgcatgctccaggatgttccaag |
14760321 |
T |
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| Q |
128 |
ccttgtcaccatattcagca |
147 |
Q |
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||||||| |||| |||||| |
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| T |
14760322 |
tcttgtcagcataatcagca |
14760341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 17568294 - 17568184
Alignment:
| Q |
34 |
atgagaaagaacctgtaaagctcttcaaaactgagaatattcctagcgttgtgattgtatatccgacgaattgcatgttccagaatgttccaagccttgt |
133 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| | |||||||||| ||||| |||||||||| ||||| |
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| T |
17568294 |
atgagaaagaacctgtaaagctcttcaaaactg---atattcctaacgttgtggttgtataagtcatgaattgcatgctccaggatgttccaagtcttgt |
17568198 |
T |
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| Q |
134 |
caccatattcagca |
147 |
Q |
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|| |||| |||||| |
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| T |
17568197 |
cagcataatcagca |
17568184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 15884339 - 15884444
Alignment:
| Q |
36 |
gagaaagaacctgtaaagctcttcaaaactgagaatattc-ctagcgttgtgattgtatatccgacgaattgcatgttccagaatgttccaagccttgtc |
134 |
Q |
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||||||||||||||||||||||||||||||| || || | || |||||||||||||||| || ||||||||| ||| ||||||||||||| | |||| |
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| T |
15884339 |
gagaaagaacctgtaaagctcttcaaaactg----taatcacaagagttgtgattgtatatctgatgaattgcatcttcaagaatgttccaagtcatgtc |
15884434 |
T |
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| Q |
135 |
accatattca |
144 |
Q |
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| || ||||| |
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| T |
15884435 |
agcaaattca |
15884444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 17622439 - 17622478
Alignment:
| Q |
30 |
aatgatgagaaagaacctgtaaagctcttcaaaactgaga |
69 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| |
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| T |
17622439 |
aatgatgagaaagaacctgtgaagctcttcaaaattgaga |
17622478 |
T |
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