View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_4 (Length: 565)
Name: NF17001_low_4
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Original strand, 38793508 - 38794026
Alignment:
| Q |
18 |
atgaaaacttaaaattttgtttgtgacactcaaagctttaatggtgtcactttgtcatttaataatagcttatttaggaaagtaatttaatagttgaatg |
117 |
Q |
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| T |
38793508 |
atgaaaacttaaaattttgtttgtgacactcagagctttaatggtgtcactttgtcatttaataatagcttatttaggaaagtaatttaatagttgaatg |
38793607 |
T |
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| Q |
118 |
atgtcattgtcaatgtccaacttattgctacaaacaaagttcttgtttatttcacacatagttttgctcattgcattgtactattttgcttttgtttgga |
217 |
Q |
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| T |
38793608 |
atgtcattgtcaatgtccaacttagtgctacaaacaaagttcttgtttatttcacacatagttttgctcattgcattgtactattttgcttttgtttgga |
38793707 |
T |
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| Q |
218 |
agaaagacaagaacga-ttatataggcttttcaatgatttgaacttctacgtttccttgtaattaattatataggatatttgcactaaactcaacgaata |
316 |
Q |
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| T |
38793708 |
agaaagacaagaacgatttatataggcttttcaatgatttgagcttctacgtttccttg----taattatataggatatttgcactaaactcagcgaata |
38793803 |
T |
|
| Q |
317 |
atggcagtgagttataattataaagacgttggtttatttaaacttttataatcaaaggatactcttacaagttcaaagaataaatatgtgttccacttca |
416 |
Q |
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| T |
38793804 |
atggcagtgag------ttataaagacgttggtttatttaaacttttataatcaaaggatactcttacaagttcaaagaataaatatgtgttccacttca |
38793897 |
T |
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| Q |
417 |
caatttatatccatgtttatgtagtttccaaattttgtttggacgacacatagaataaggggaagccattctatttgtttttggttacctcctctatcaa |
516 |
Q |
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| T |
38793898 |
caatttatatccatgtttatgtagtttccaaattttgtttg---gacacatagaataaggggaagccattctatttgtttttggttacctcctctatcaa |
38793994 |
T |
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| Q |
517 |
gatatgatgatttatcttgagtatttagttat |
548 |
Q |
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| T |
38793995 |
gatatgatgatttatcttgagtatttagttat |
38794026 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 469
Target Start/End: Complemental strand, 22069087 - 22069020
Alignment:
| Q |
402 |
atgtgttccacttcacaatttatatccatgtttatgtagtttccaaattttgtttggacgacacatag |
469 |
Q |
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| T |
22069087 |
atgtgatccacctcacattttatatccttgtttatgtagttttcaaattttgtttagaggacaaatag |
22069020 |
T |
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