View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_5 (Length: 511)
Name: NF17001_low_5
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 14001031 - 14001509
Alignment:
| Q |
1 |
ggttaataggatgtttaaggaggaggttgttaaactgcagagtggggagtatgagaagatgttttgttcatacttttttgtaataagaatgatgctatat |
100 |
Q |
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| T |
14001031 |
ggttgataggatgtttaaggaggaggttgttaaactgcagagtggggagtatgagaagatgttttgt--------------aataagaatgatgctatat |
14001116 |
T |
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| Q |
101 |
cattgctgtttgattccttaaaaatttcatcttgcatgttttcatcattgctagtgattgatttttgttacatttaaactatattgtcaagtcgtgatat |
200 |
Q |
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| T |
14001117 |
cattgctgtttgattccttaaaaatttcatcttgcatgttttcatcattgctagtgattgatttttgttacatttaaactatattgtcaagtcgtgatat |
14001216 |
T |
|
| Q |
201 |
gtcatatgtcatgcatttctttcagaactacgtgggctgattttggtggggaaacaaggtatgtctctctctgctttctctcatttggtgctttataaaa |
300 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14001217 |
gtcatatgttatgcatttctttcagaactatgtgggctgattttggtggggaaacaaggtatgtctc--tctgctttctctcatttggtgctttataaaa |
14001314 |
T |
|
| Q |
301 |
ccaaatgttttacccattgaatattaaagacatccttgaaaatattgcaagaattgcaggccatagagaacagttcacgcctcgacagaggaattctcaa |
400 |
Q |
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| T |
14001315 |
ccaaatgttttacccattgaatattaaagacatccttgaaaatattgcaagaattgcaggccatagagaacagttcacgcctcgacagaggaattctcaa |
14001414 |
T |
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| Q |
401 |
tatttccctagcaaactactcttcacaaagttttgagggagaccactttgcctcttcatttgaattcattaacatcacacaatgatcaggaaaac |
495 |
Q |
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| T |
14001415 |
tatttccctagcaaactactcttcacaaagttttgatggagaccactttgcctcttcatttgaattcattaacatcacacaatgatcaggaaaac |
14001509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 307 - 409
Target Start/End: Original strand, 18288403 - 18288504
Alignment:
| Q |
307 |
gttttacccattgaatattaaagacatccttgaaaatattgcaagaattgcaggccatagagaacagttcacgcctcgacagaggaattctcaatatttc |
406 |
Q |
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|||||||| ||||||| | ||| | |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| | |
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| T |
18288403 |
gttttacctattgaatgt-aaacaaatccttgagaatattgcaagaattgcaggccatagagaacagtgcttgcctcgacagaggaattctcagtattgc |
18288501 |
T |
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| Q |
407 |
cct |
409 |
Q |
| |
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||| |
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| T |
18288502 |
cct |
18288504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 1473234 - 1473263
Alignment:
| Q |
132 |
ttgcatgttttcatcattgctagtgattga |
161 |
Q |
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| T |
1473234 |
ttgcatgttttcatcattgctagtgattga |
1473263 |
T |
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