View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_6 (Length: 505)
Name: NF17001_low_6
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 38620499 - 38620017
Alignment:
| Q |
18 |
cttcacttgcagccaaacccaggactttcataagaacagtttttctacaaatgctgtcaggtaagaattagaaactattgttttattttgttttgagaag |
117 |
Q |
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| T |
38620499 |
cttcacttgcagccaaacccaggactttcataagaacagtttttctacaaatgctgtcaggtaagaattagaaactattgttttattttgttttgagaag |
38620400 |
T |
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| Q |
118 |
gaaaacctaaattgatcacaatttcgtcctctgcattataaccattcttatgatat--tctcaacatttgcagaaaatgagtgggcatttgatttgcttt |
215 |
Q |
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| T |
38620399 |
gaaaacctaaattgatcacaatttcgtcctctgcattataaccattcttatgatatattctcaacatttgcagaaaatgagtgggcatttgatttgcttt |
38620300 |
T |
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| Q |
216 |
attgtgtggcatttgtggttatggacaaacagtggttggagacaaacgctacgtacatgcagtttaacgtgagaatccgtctacttgttatatgattcat |
315 |
Q |
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| T |
38620299 |
attgtgtggcatttgtggttatggataaacagtggttggagacaaacgctacgtacatgcagtttaacgtgagaatccgtctacttgttatatgattcat |
38620200 |
T |
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| Q |
316 |
gagttccttttaaccttagtcctggatttcaaaattgatgttcatatgtaaaattttgtgtgctttattgaagaggctctttcaaaggggttgaataatt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38620199 |
gagttccttttaaccttagtcctggatttcaaaattgatgttcatatgtaaaattttgtgtgctttattgaagaggctctttcaaaggggttgaataatt |
38620100 |
T |
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| Q |
416 |
gtttctttttcattcctatcatcacaggatatcttgaaatcaacacgagttcagctggaaaaagagttgatgattgatgatgt |
498 |
Q |
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| T |
38620099 |
gtttctttttcattcctatcatcacaggatatcttgaaatcaacacgagttcagctggaaaaagagttgatgattgatgatgt |
38620017 |
T |
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