View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17001_low_8 (Length: 430)
Name: NF17001_low_8
Description: NF17001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17001_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 31292141 - 31292538
Alignment:
| Q |
18 |
catgggaggtcttctaggacccttctaagtgtgataggctgggtgagggtcattctctatcttaattaactcattaagtttcctattgaggatataacat |
117 |
Q |
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| T |
31292141 |
catgggaggtcttctaggacccttctaagtgtgataggctgggtgagggtcattctctatcttaattaactcattaagtttccttttgaggatataacat |
31292240 |
T |
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| Q |
118 |
tggacatcggccatgttcgtcttccatagattgttaaggttgtgacagagtttccaaaggcttgtgagattttaagttgcacaaatccctctgaaaatca |
217 |
Q |
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| T |
31292241 |
cagacgtcggccaagttcgtcttccatagattgttaaggttgtgacagagttcccaaaggcttgtgagattttaagttgcacaaatccctctgaaaatta |
31292340 |
T |
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| Q |
218 |
attatttccatggatctcatcgtgaatactcaggctcaacatgaatctgctaggttatgacactccaatcaccgagttcagcatgtggagttgctatgat |
317 |
Q |
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||||| |||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
31292341 |
attatctccatggatctcgtcgtgaatacttaggctcaacatgaatttgctagattatgacactccaatcgtcgagttcaacatgtggagttgctatgat |
31292440 |
T |
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| Q |
318 |
ggatctagctatcttggaagatttcacacc-ttttccaactattattttggtaagccgagggaacgaagttacaagaacttagttcccataaacgttg |
414 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| |||||||||||| |
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| T |
31292441 |
agatctagctattttggaagatttcacacctttttccaactattattttggtaggccaagggaacaaagttacaagaacttagtttccataaacgttg |
31292538 |
T |
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