View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_high_18 (Length: 332)

Name: NF17002_high_18
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_high_18
NF17002_high_18
[»] chr6 (15 HSPs)
chr6 (22-260)||(21150199-21150432)
chr6 (113-188)||(21181559-21181634)
chr6 (142-207)||(21352233-21352299)
chr6 (107-170)||(31106485-31106548)
chr6 (112-186)||(21267154-21267228)
chr6 (107-185)||(31094768-31094846)
chr6 (136-204)||(21190469-21190538)
chr6 (114-186)||(21136783-21136855)
chr6 (118-235)||(21147277-21147401)
chr6 (246-313)||(21219973-21220041)
chr6 (114-181)||(21233462-21233530)
chr6 (144-196)||(21313062-21313114)
chr6 (178-235)||(21184371-21184429)
chr6 (118-203)||(21279840-21279926)
chr6 (31-76)||(33711900-33711945)
[»] scaffold0016 (2 HSPs)
scaffold0016 (22-188)||(65106-65275)
scaffold0016 (143-221)||(74842-74921)
[»] scaffold0060 (1 HSPs)
scaffold0060 (132-192)||(20109-20168)
[»] scaffold0202 (1 HSPs)
scaffold0202 (107-185)||(3484-3562)
[»] chr8 (1 HSPs)
chr8 (120-173)||(24944361-24944414)
[»] scaffold0272 (1 HSPs)
scaffold0272 (107-147)||(3455-3495)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 22 - 260
Target Start/End: Complemental strand, 21150432 - 21150199
Alignment:
Q  22 caatggcctgattaaagtgaatccaataccctaaacaatactaccataaactacagggtaataatccaaatcaatatcaatagttaatatataatgtatt 121  Q
    ||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21150432 caatggcttgattaaagtgaatccaatgccatagacaatactaccataaactacagggtaataatccaaatcaatatcaatagttaatatataatgtatt 21150333  T
Q  122 taaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctt-acattagactttggatcctcaattt 220  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||      ||||| ||    
T  21150332 taaattgattatgttaaatgtgagagtgtttcatgtgcatctaataaagcatcttcattattctcttcttccttaacattagactt------ctcaactt 21150239  T
Q  221 tttcctcaatttctcgttttttatcaattggatttatttg 260  Q
    ||||||||||||||| |  ||||||||||| |||||||||    
T  21150238 tttcctcaatttctcttcatttatcaattgtatttatttg 21150199  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 21181634 - 21181559
Alignment:
Q  113 taatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcct 188  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| |||| ||||||||    
T  21181634 taatgtattaaaaatgattatgttaaatgtgacaatgtttcatgagcatctaaaaaagcatcatcattattctcct 21181559  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 21352299 - 21352233
Alignment:
Q  142 tgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctt-acattagacttt 207  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||    
T  21352299 tgacaatgttttatgtgcatctaataaaacatgttcatcattctccacttccttaacattagacttt 21352233  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 170
Target Start/End: Original strand, 31106485 - 31106548
Alignment:
Q  107 aatatataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaag 170  Q
    |||| |||||| ||||||||||||| |||||||||||| | |||||||||||||||||| ||||    
T  31106485 aatacataatgcatttaaaatgattttgttaaatgtgatagtgtttcatgtgcatctaaaaaag 31106548  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 21267228 - 21267154
Alignment:
Q  112 ataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctc 186  Q
    |||||| |||||||||||||||||| || |||||  ||||| |||||||||||| ||| ||| ||||||||||||    
T  21267228 ataatgcatttaaaatgattatgttgaaagtgacggtgttttatgtgcatctaaaaaatcattttcatcattctc 21267154  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 31094846 - 31094768
Alignment:
Q  107 aatatataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattct 185  Q
    |||| ||||||||||||||||| || ||||||||| |||  || ||||||||||||||| |||| ||| ||||||||||    
T  31094846 aatacataatgtatttaaaatggttttgttaaatgcgacggtgcttcatgtgcatctaaaaaagtatcatcatcattct 31094768  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 21190538 - 21190469
Alignment:
Q  136 taaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctt-acattagac 204  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||  ||||| |||||||| |||||||||    
T  21190538 taaatgtgacaatgtttcatgttcatctaaaaaagcatcttaattgttctcatcttccttaacattagac 21190469  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 21136855 - 21136783
Alignment:
Q  114 aatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctc 186  Q
    |||| ||||||||| | ||||||||  |||||| ||||| |||||||||||| ||||||| ||||||||||||    
T  21136855 aatgcatttaaaattaatatgttaagagtgacactgttttatgtgcatctaaaaaagcattttcatcattctc 21136783  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 21147401 - 21147277
Alignment:
Q  118 tatttaaaatgattatgttaaatgtgacaatgttt-----catgtgcatctaataaag-catcttcatcattctcctcttcctt-acattagactttgga 210  Q
    |||||||||||||| |||| ||||||||| |||||     |||||||||| || |||  |||  |||||||||||||||||||| ||||||||||||  |    
T  21147401 tatttaaaatgattctgtttaatgtgacattgttttatgtcatgtgcatccaaaaaaaacatagtcatcattctcctcttccttaacattagactttcta 21147302  T
Q  211 tcctcaattttttcctcaatttctc 235  Q
    | ||||| |||||| ||||||||||    
T  21147301 ttctcaactttttcgtcaatttctc 21147277  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 21220041 - 21219973
Alignment:
Q  246 aattggatttatttgtatcatg-gattcctttatcagttggatttattgaatggttcgaagttttaaag 313  Q
    ||||||||||||||| | |||  ||||||||||||| ||||||| |||||||||||| || ||||||||    
T  21220041 aattggatttatttgcaacattagattcctttatcaattggattgattgaatggttcaaaattttaaag 21219973  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 21233530 - 21233462
Alignment:
Q  114 aatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatc-taataaagcatcttcatca 181  Q
    ||||| |||| ||||||| |||||||||||| ||||||||||| ||||| ||| ||| |||||||||||    
T  21233530 aatgtgtttataatgattctgttaaatgtgaaaatgtttcatgcgcatcataaaaaaacatcttcatca 21233462  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 21313114 - 21313062
Alignment:
Q  144 acaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctta 196  Q
    |||||||||| |||||||||||  |||||||||| ||||| ||||||||||||    
T  21313114 acaatgtttcgtgtgcatctaaagaagcatcttcgtcattgtcctcttcctta 21313062  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 21184429 - 21184371
Alignment:
Q  178 atcattctcctcttcctta-cattagactttggatcctcaattttttcctcaatttctc 235  Q
    ||||||||||||||||||| ||| |||||||  || ||||| |||||||||||||||||    
T  21184429 atcattctcctcttccttaacatcagactttctattctcaactttttcctcaatttctc 21184371  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 21279926 - 21279840
Alignment:
Q  118 tatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctc-ttccttacattaga 203  Q
    |||||||||||||| | ||| | ||||||  |||||||||  |||| | |||||||||||||||||||| || ||| ||||||||||    
T  21279926 tatttaaaatgattctattatacgtgacacagtttcatgtatatcttaaaaagcatcttcatcattctcatctttctttacattaga 21279840  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 33711945 - 33711900
Alignment:
Q  31 gattaaagtgaatccaataccctaaacaatactaccataaactaca 76  Q
    |||||||||||||||||| || ||||||| ||||||||||| ||||    
T  33711945 gattaaagtgaatccaatgccataaacaacactaccataaattaca 33711900  T

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Target: scaffold0016 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 65106 - 65275
Alignment:
Q  22 caatggcctgattaaagtgaatccaataccctaaacaatactaccataaactacagggtaa---taatccaaatcaatatcaatagttaatatataatgt 118  Q
    ||||||| |||||||| |||||||||| || ||||||||||||||||||||||||| ||||   |||| |||| |||||||||| || ||||||||||||    
T  65106 caatggcttgattaaactgaatccaatgccataaacaatactaccataaactacagagtaagtataattcaaagcaatatcaatggtaaatatataatgt 65205  T
Q  119 atttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcct 188  Q
    ||||| |||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||    
T  65206 atttacaatgattatgttaaatgtgatagtgtttcatgtgcatttaaaaaagcatcttcatcattctcct 65275  T

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Target: scaffold0016; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 74842 - 74921
Alignment:
Q  143 gacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttcctt-acattagactttggatcctcaatttt 221  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||  || |||||||||    
T  74842 gacaatgtttcatgttcatctaataaagcaccttcattattctcctcttccttaacattagactttctattctcaatttt 74921  T

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Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 20168 - 20109
Alignment:
Q  132 atgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattctcctcttc 192  Q
    |||||| |||||||||| |||||||||||||||| |||||| | |||||||||||||||||    
T  20168 atgttatatgtgacaatctttcatgtgcatctaa-aaagcaacatcatcattctcctcttc 20109  T

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Target: scaffold0202 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 3562 - 3484
Alignment:
Q  107 aatatataatgtatttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcatcttcatcattct 185  Q
    |||| ||||||||||||||||| || ||||||||||| || || ||||||||| ||||| |||| ||| || |||||||    
T  3562 aatacataatgtatttaaaatggttttgttaaatgtggcagtgcttcatgtgcttctaaaaaagtatcatcgtcattct 3484  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 24944414 - 24944361
Alignment:
Q  120 tttaaaatgattatgttaaatgtgacaatgtttcatgtgcatctaataaagcat 173  Q
    |||| ||||||| |||||||||||||||| ||| |||||||||| | |||||||    
T  24944414 tttataatgattttgttaaatgtgacaatattttatgtgcatctgaaaaagcat 24944361  T

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Target: scaffold0272 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 3455 - 3495
Alignment:
Q  107 aatatataatgtatttaaaatgattatgttaaatgtgacaa 147  Q
    |||| |||||||||| ||||||||| |||||||||||||||    
T  3455 aatacataatgtattcaaaatgattctgttaaatgtgacaa 3495  T

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