View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17002_high_24 (Length: 306)
Name: NF17002_high_24
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_high_24 |
 | |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 25623508 - 25623217
Alignment:
| Q |
1 |
taaaataacgactagggcgttacatatgatgcatgcagaactctttcccgaggcctataaaaatggtaaagcttttcatttgtatactaagcaagtaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25623508 |
taaaataacgactaggacgttacatatgatgcatgcagaagtctttcccgaggcctataaaaatggtaaagcttttcatttgtatgctaagcaagtaaaa |
25623409 |
T |
|
| Q |
101 |
tgcaagnnnnnnnnnnnnnnnntatcctcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataac |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25623408 |
tgcaagaaaataaaaatcaaagtatcctcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataac |
25623309 |
T |
|
| Q |
201 |
ctcctcatttttnnnnnnntgtggcatcaaagtttatgttacaataagaaatccttccatggtcatggagaataatgaagcaatgtattttc |
292 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25623308 |
ctcctcatttttaaaaaaatgtgtcatcaaagtttatgttacaataagaaatccttccatggtcatggagaataatgaagcaatgtattttc |
25623217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 25725493 - 25725226
Alignment:
| Q |
25 |
tatgatgcatgcagaactctttcccgaggcctataaaaatggtaaagcttttcatttgtatactaagcaagtaaaatgcaagnnnnnnnnnnnnnnnnta |
124 |
Q |
| |
|
|||||||| || |||||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| | |
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| T |
25725493 |
tatgatgcgtgtagaactctttcctaaggcctgtaaaaatggtagagcttatcatttgtatactaagcaagtaaaatgcaagaaaataaaaatcaaagca |
25725394 |
T |
|
| Q |
125 |
tcctcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataacctcctcatttttnnnnnnntgtgg |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| ||||| |
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| T |
25725393 |
tcctcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcccaaaagctcactataacctcctcattttaaaaaaattgtgg |
25725294 |
T |
|
| Q |
225 |
catcaaagtttatgttacaataagaaatccttccatggtcatggagaataatgaagcaatgtattttc |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| ||||| |
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|
| T |
25725293 |
catcaaagtttatgttacaataataaatccttccatagtcatggagaattctgaagcaatgtcttttc |
25725226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 25394485 - 25394216
Alignment:
| Q |
25 |
tatgatgcatgcagaactctttcccgaggcctataaaaatggtaaagcttttcatttgtatactaagcaagtaaaatgcaagnnnnnnnnnnnnnnnnta |
124 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
25394485 |
tatgatgcatgcagaactctttcctgaggcctataaaaatggtagagcttatcatttgtatactaagcaagtaaaatgcaagaaaataaaaatcaaagcg |
25394386 |
T |
|
| Q |
125 |
tcctcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataacctcctcattt--ttnnnnnnntgt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||| |
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| T |
25394385 |
tcctcttaacaagtagatattgtccttctcttaaattttatgtcatcctcaatttctcccaaaagctcgctataacctcctcatttcaaaaaaaaattgt |
25394286 |
T |
|
| Q |
223 |
ggcatcaaagtttatgttacaataagaaatccttccatggtcatggagaataatgaagcaatgtattttc |
292 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||| ||||| |
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| T |
25394285 |
ggcatcaaagtttatgttacaataataaatccttccatagtcatggagaataccgaagcagtgtcttttc |
25394216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 25369734 - 25369549
Alignment:
| Q |
25 |
tatgatgcatgcagaactctttcccgaggcctataaaaatggtaaagcttttcatttgtatactaagcaagtaaaatgcaagnnnnnnnnnnnnnnnnta |
124 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||| | |
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| T |
25369734 |
tatgatgcatgcagaactcttccctgaggcctataaaattggtagagcttatcatttgtataccaagcaagtaaaatgcaataaaataaaaatcaaagca |
25369635 |
T |
|
| Q |
125 |
tcctcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataacctcctcatttt |
211 |
Q |
| |
|
||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||||| |
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|
| T |
25369634 |
tcctcatgacaa-tagatattgtccttctcttaaattttatgtcttcctcaatttctcccgaaagctcactataacctcctcatttt |
25369549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 128 - 292
Target Start/End: Complemental strand, 25805755 - 25805589
Alignment:
| Q |
128 |
tcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataacctc--ctcatttttnnnnnnntgtggc |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| | | |||||| |
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|
| T |
25805755 |
tcttaacaagtagatattgtcattctcttaaattttatgtcttcctcaattgctcccaaaagctcgctataacctcatttaaaaaaaaaaaaaatgtggc |
25805656 |
T |
|
| Q |
226 |
atcaaagtttatgttacaataagaaatccttccatggtcatggagaataatgaagcaatgtattttc |
292 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||||| |
|
|
| T |
25805655 |
atcaaagtttatgttacgataagaaatccttccatagtcatggagaattatgaagaaatgtcttttc |
25805589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 128 - 292
Target Start/End: Complemental strand, 25810785 - 25810619
Alignment:
| Q |
128 |
tcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataacctc--ctcatttttnnnnnnntgtggc |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| | | |||||| |
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|
| T |
25810785 |
tcttaacaagtagatattgtcattctcttaaattttatgtcttcctcaattgctcccaaaagctcgctataacctcatttaaaaaaaaaaaaaatgtggc |
25810686 |
T |
|
| Q |
226 |
atcaaagtttatgttacaataagaaatccttccatggtcatggagaataatgaagcaatgtattttc |
292 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||||| |
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|
| T |
25810685 |
atcaaagtttatgttacgataagaaatccttccatagtcatggagaattatgaagaaatgtcttttc |
25810619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 128 - 292
Target Start/End: Complemental strand, 25823479 - 25823313
Alignment:
| Q |
128 |
tcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataacctc--ctcatttttnnnnnnntgtggc |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| | | |||||| |
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|
| T |
25823479 |
tcttaacaagtagatattgtcattctcttaaattttatgtcttcctcaattgctcccaaaagctcgctataacctcatttaaaaaaaaaaaaaatgtggc |
25823380 |
T |
|
| Q |
226 |
atcaaagtttatgttacaataagaaatccttccatggtcatggagaataatgaagcaatgtattttc |
292 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| ||||| |
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|
| T |
25823379 |
atcaaagtttatgttacgataagaaatccttccatagtcatggagaattatgaagaaatgtcttttc |
25823313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 25656698 - 25656651
Alignment:
| Q |
124 |
atcctcttaacaagtagatattgtccttctcttaaattttatgtcttc |
171 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
25656698 |
atcctcttaacaaggagatattgtccttctcttaaattttatatcttc |
25656651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 6784127 - 6784097
Alignment:
| Q |
1 |
taaaataacgactagggcgttacatatgatg |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6784127 |
taaaataacgactagggcgttacatatgatg |
6784097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 25805807 - 25805777
Alignment:
| Q |
76 |
tcatttgtatactaagcaagtaaaatgcaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25805807 |
tcatttgtatactaagcaagtaaaatgcaag |
25805777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 25810837 - 25810807
Alignment:
| Q |
76 |
tcatttgtatactaagcaagtaaaatgcaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25810837 |
tcatttgtatactaagcaagtaaaatgcaag |
25810807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 106
Target Start/End: Complemental strand, 25823531 - 25823501
Alignment:
| Q |
76 |
tcatttgtatactaagcaagtaaaatgcaag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25823531 |
tcatttgtatactaagcaagtaaaatgcaag |
25823501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 2983 - 3251
Alignment:
| Q |
25 |
tatgatgcatgcagaactctttcccgaggcctataaaaatggtaaagcttttcatttgtatactaagcaagtaaaatgcaagnnnnnnnnnnnnnnnnt- |
123 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
2983 |
tatgatgcatgcagaactcttccctgaggcctgtaaaaatggtagagcttatcatttgtatactaaccaagtaaaatgcaagaaaaaaaaaaatcaaagc |
3082 |
T |
|
| Q |
124 |
atcctcttaacaagtagatattgtccttctcttaaattttatgtcttcctcaatttctcgcaaaggctcgctataacctcctcatttttnnnnnnntgtg |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||| |||| |
|
|
| T |
3083 |
atcctcttaacaagtagatattgtccttctcttaaattttatgcattcctcaatttctcccaaaagctcgctataacctcctcattttaaaaaaaatgtg |
3182 |
T |
|
| Q |
224 |
gcatcaaagtttatgttacaataagaaatccttccatggtcatggagaataatgaagcaatgtattttc |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||| |
|
|
| T |
3183 |
gcatcaaagtttatgttacaataagaaatccttccatagtcatggagaatagtgaagtaatgtcttttc |
3251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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