View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_high_26 (Length: 294)
Name: NF17002_high_26
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_high_26 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 36992338 - 36992045
Alignment:
| Q |
1 |
tcgggcgtcacactctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtgaccaaattt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36992338 |
tcgggcgtcacactctcaaactttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtgaccaaattt |
36992239 |
T |
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| Q |
101 |
caaaggaccaaatgttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36992238 |
caaaggaccaaatgttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatgga |
36992139 |
T |
|
| Q |
201 |
gatattatacaatggttatcaatcaataaatgctgacaatactacggctaagtttgtcagaatggagaaaaataggtttgggttggttggtgat |
294 |
Q |
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| T |
36992138 |
gatattatacaatggttatcaatcaataaatgctgacaatactacggctaagtttgtcagaattgagaaaaataggtttgggttggttggtgat |
36992045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 37002041 - 37001762
Alignment:
| Q |
15 |
ctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtgaccaaatttcaaaggaccaaatg |
114 |
Q |
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| T |
37002041 |
ctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtggccaaatttcaaaggaccaaatg |
37001942 |
T |
|
| Q |
115 |
ttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatacaatg |
214 |
Q |
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| T |
37001941 |
ttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatacaatg |
37001842 |
T |
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| Q |
215 |
gttatcaatcaataaatgctgacaatactacggctaagtttgtcagaatggagaaaaataggtttgggttggttggtgat |
294 |
Q |
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| T |
37001841 |
gttatcaatcaataaatgctgacaatactacggctaagtttgtcagaattgagaaaaataggtttgggttggttggtgat |
37001762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 13682539 - 13682812
Alignment:
| Q |
15 |
ctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtgaccaaatttcaaaggaccaaatg |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||| |||| ||||||||||| |
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| T |
13682539 |
ctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagcttctgtgctttcatgaaaaaaagtgatcaaa------aggaccaaatg |
13682632 |
T |
|
| Q |
115 |
ttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatacaatg |
214 |
Q |
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||||||||| || |||||||||||| ||||||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
13682633 |
ttttgggaagaagaagatgtaattaaggaagccttggtggagcacttttttgtggttggtgttgtgacatctcctttgctaatggacatattatacaatg |
13682732 |
T |
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| Q |
215 |
gttatcaatcaataaatgctgacaatactacggctaagtttgtcagaatggagaaaaataggtttgggttggttggtgat |
294 |
Q |
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||| | |||||||| ||||| ||||| |||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
13682733 |
gttgtaaatcaatagatgctaacaatgctacggctaagtttgtcagaatcaaggaaaataggtttgagttggttggtgat |
13682812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 13669682 - 13669924
Alignment:
| Q |
15 |
ctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtgaccaaatttcaaaggaccaaatg |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||| |||| ||||||||||| |
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| T |
13669682 |
ctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagcttctgtgctttcatgaaaaaaagtgatcaaa------aggaccaaatg |
13669775 |
T |
|
| Q |
115 |
ttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatacaatg |
214 |
Q |
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||||||||| || |||||||||||| ||||||||||||| ||||||| ||||| | ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
13669776 |
ttttgggaagaagaagatgtaattaaggaagccttggtggagcacttttttgtggttggtgttgtgacatctcctttgctaatggacatattatacaatg |
13669875 |
T |
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| Q |
215 |
gttatcaatcaataaatgctgacaatactacggctaagtttgtcagaat |
263 |
Q |
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||| | |||||||| ||||| ||||| |||||||||||||||||||||| |
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| T |
13669876 |
gttgtaaatcaatagatgctaacaatgctacggctaagtttgtcagaat |
13669924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 2 - 287
Target Start/End: Complemental strand, 26647213 - 26646926
Alignment:
| Q |
2 |
cgggcgtcacactc--tcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtgaccaaatt |
99 |
Q |
| |
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|||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| | ||| | |
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| T |
26647213 |
cgggcgtcacactccctcaagttttttgtctgctaattaactaacatgatttttcaatatttgcagattttgtactttcatgaaagaaagtggcaaaagt |
26647114 |
T |
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| Q |
100 |
tcaaaggaccaaatgttttgggaaaaacaagatgtaattatggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatgg |
199 |
Q |
| |
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|||| | || |||| || ||||||| |||||||||||| ||||||||||||| | | || ||| ||||||||| ||||||||||||||||||||||| |
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| T |
26647113 |
tcaacgaacataatgattcgggaaaaggaagatgtaattaaggaagccttggtgcatgaattttttatagatggtgttgtgacatctcctttgctaatgg |
26647014 |
T |
|
| Q |
200 |
agatattatacaatggttatcaatcaataaatgctgacaatactacggctaagtttgtcagaatggagaaaaataggtttgggttggt |
287 |
Q |
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||||||||| | |||||||| |||||||||| ||| |||||||||||| ||||||||||| ||| |||||| || | |||| |||||| |
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| T |
26647013 |
agatattatgcgatggttatgaatcaataaaggctaacaatactacggataagtttgtcataattgagaaagattgttttgagttggt |
26646926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 40 - 294
Target Start/End: Original strand, 13689138 - 13689380
Alignment:
| Q |
40 |
ctaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtgaccaaatttcaaaggaccaaatgttttgggaaaaacaagatgtaatta |
139 |
Q |
| |
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| T |
13689138 |
ctaatatgatttttcaatatttgcagattctgtgctttcatgaaaaaaagtgaccaaa------aggaccaaatgttttgggaagaa---gatgtaatta |
13689228 |
T |
|
| Q |
140 |
tggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatattatacaatggttatcaatcaataaatgctgacaa |
239 |
Q |
| |
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||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||| | |||||||||||| | |||||||| ||||| |||| |
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| T |
13689229 |
aggaagccttggtggagcacttttttctagatggtgttgtgacatctcctttgctaatggaca---tatacaatggttgtaaatcaatagatgctaacaa |
13689325 |
T |
|
| Q |
240 |
tactacggctaagtttgtcagaatggagaaaaataggtttgggttggttggtgat |
294 |
Q |
| |
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| |||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
13689326 |
tgctacggctaagtttgtcagaatcaaggaaaataggtttgagttggttggtgat |
13689380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 13687186 - 13687342
Alignment:
| Q |
40 |
ctaatatgatttttcaatatttgcagattctgtactttcatagaagaaagtgaccaaatttcaaaggaccaaatgttttgggaaaaacaagatgtaatta |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||| || |||||||||| |
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| T |
13687186 |
ctaatatgatttttcaatatttgcagattctgtgctttcatgaaaaaaagtgaccaaa------aggaccaaatgttttgggaagaa---gatgtaatta |
13687276 |
T |
|
| Q |
140 |
tggaagccttggtgaagcacttctttgtagatggtgctgtgacatctcctttgctaatggagatat |
205 |
Q |
| |
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||||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||||| |||| |
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| T |
13687277 |
aggaagccttggtggagcacttttttctagatggtgttgtgacatctcctttgctaatggacatat |
13687342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 22188367 - 22188255
Alignment:
| Q |
182 |
catctcctttgctaatggagatattatacaatggttatcaatcaataaatgctgacaatactacggctaagtttgtcagaatggagaaaaataggtttgg |
281 |
Q |
| |
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||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||| ||| ||||||||||||| |
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| T |
22188367 |
catctcctttgataatggacatattatacaatggttatcaatcaataaatgctaacaatactacgtctaaggttgttagaattgaggaaaataggtttgg |
22188268 |
T |
|
| Q |
282 |
gttggttggtgat |
294 |
Q |
| |
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||||||||||||| |
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| T |
22188267 |
gttggttggtgat |
22188255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 8596952 - 8596894
Alignment:
| Q |
18 |
aaattttttgtttgctaattaactaat----atgatttttcaatatttgcagattctgt |
72 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
8596952 |
aaattttttgtttgctaattaactaattaatatgatttttcaatatttgcagcttctgt |
8596894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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