View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_high_29 (Length: 268)
Name: NF17002_high_29
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_high_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 73 - 268
Target Start/End: Complemental strand, 41031631 - 41031436
Alignment:
| Q |
73 |
ggtgataaattaattcaagcctttggatgttctccggtaaaactgatacaaatggtgtaaacaacaattgatttttagccttgaatttattgttcgacca |
172 |
Q |
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| T |
41031631 |
ggtgataaattcattcaagcctttggatgttctccggtaaaactgatacaaatggtgtaaacaacaattgatttttagccttaaatttattgtttgacca |
41031532 |
T |
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| Q |
173 |
atttttagatgaattaatgcatccaaacataaatcacttacatttaactcactattaactagaatcagtcatacaaaatgcattcaaatccacttt |
268 |
Q |
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| T |
41031531 |
atttttagatgaattaatgcatccaaacataaatcacttacatttaactcactattaactagaatcagtcacacaaaatgcattcaaatccacttt |
41031436 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 39981122 - 39981168
Alignment:
| Q |
193 |
atccaaacataaatcacttacatttaactcactattaactagaatca |
239 |
Q |
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| T |
39981122 |
atccaaacataaaccacttccatttaactcacttttaactaaaatca |
39981168 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 29922938 - 29923026
Alignment:
| Q |
138 |
aattgatttttagccttgaatttattgttcgaccaatttttagatgaattaatgcatccaaacataaatcactt-acatttaactcact |
225 |
Q |
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| T |
29922938 |
aattgatttttatctttgaatttattttttaactcatttttgcatgaatgaatgtatccaaacataaattacttcacattcaactcact |
29923026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 4411306 - 4411334
Alignment:
| Q |
136 |
acaattgatttttagccttgaatttattg |
164 |
Q |
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| T |
4411306 |
acaattgatttttagccttgaatttattg |
4411334 |
T |
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