View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17002_high_34 (Length: 238)
Name: NF17002_high_34
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_high_34 |
 | |
|
| [»] chr8 (8 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 15447582 - 15447361
Alignment:
| Q |
17 |
aaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15447582 |
aaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggaga |
15447483 |
T |
|
| Q |
117 |
ggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatgacattattattgggaacaaaaagaacaaaacacatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15447482 |
ggagttcattgtaacatgaatggtagagtcacaaatatcagtctcccttgtttcactgatgatgacattattattgggaacaaaaagaacaaaacacatt |
15447383 |
T |
|
| Q |
217 |
gtctggcaggtaagttgcatct |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15447382 |
gtctggcaggtaagttgcatct |
15447361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 15285352 - 15285131
Alignment:
| Q |
17 |
aaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggaga |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
15285352 |
aaaagacaaacaaatactcctcagttttaaacatggactcactgattcattaggcatgttgtcaacatggtccaacaaaaaagattgttgcgaatggaga |
15285253 |
T |
|
| Q |
117 |
ggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatgacattattattgggaacaaaaagaacaaaacacatt |
216 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||| || |||||||||||||||||||||| |
|
|
| T |
15285252 |
ggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaacacatt |
15285153 |
T |
|
| Q |
217 |
gtctggcaggtaagttgcatct |
238 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
15285152 |
gtctggcaggtaaatttcatct |
15285131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 15465721 - 15465500
Alignment:
| Q |
17 |
aaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggaga |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
15465721 |
aaaagacaaacaaatactcctcagttttaaacatggactcactgattcattaggcatgttgtcaacatggtccaacaaaaaagattgttgcgaatggaga |
15465622 |
T |
|
| Q |
117 |
ggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatgacattattattgggaacaaaaagaacaaaacacatt |
216 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||| || |||||||||||||||||||||| |
|
|
| T |
15465621 |
ggagttcattgtaatatcaatggcagagtcacaaatatcagcctcccttgttttactgatgatgaaatcattactgaaaacaaaaagaacaaaacacatt |
15465522 |
T |
|
| Q |
217 |
gtctggcaggtaagttgcatct |
238 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
15465521 |
gtctggcaggtaaatttcatct |
15465500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 15314741 - 15314577
Alignment:
| Q |
17 |
aaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggaga |
116 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
15314741 |
aaaagacaaacaaatactcctttgttttaaacatggactcattgatccattaggcatgttgccaacatggtccaacaaagaagattgttgcaaatggaga |
15314642 |
T |
|
| Q |
117 |
ggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatga |
181 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15314641 |
ggagttcattgtaacatgaatggcagagtcacaaatatcagcctcccttgtttcaccgatgatga |
15314577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 15495110 - 15494946
Alignment:
| Q |
17 |
aaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggaga |
116 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
15495110 |
aaaagacaaacaaatactcctttgttttaaacatggactcattgatccattaggcatgttgccaacatggtccaacaaagaagattgttgcaaatggaga |
15495011 |
T |
|
| Q |
117 |
ggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatga |
181 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15495010 |
ggagttcattgtaacatgaatggcagagtcacaaatatcagcctcccttgtttcaccgatgatga |
15494946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 15303867 - 15303667
Alignment:
| Q |
17 |
aaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggaga |
116 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||| | |||||||| ||||||||| |
|
|
| T |
15303867 |
aaaagacaaacaaatacttctctgttttaaacatggaatcattgatccattaggcatgttggcaacatggtccaacaaagaggattgttgtaaatggaga |
15303768 |
T |
|
| Q |
117 |
ggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatgacattattattgggaacaaaaagaacaaaacacatt |
216 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
15303767 |
ggagttcattgtaacataaatggcagagtcacaaatatcagtctcccttgttccactgatgatgacatcaccattgggcacaaaaagaacaaaacacatt |
15303668 |
T |
|
| Q |
217 |
g |
217 |
Q |
| |
|
| |
|
|
| T |
15303667 |
g |
15303667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 15484236 - 15484036
Alignment:
| Q |
17 |
aaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggaga |
116 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||| | |||||||| ||||||||| |
|
|
| T |
15484236 |
aaaagacaaacaaatacttctctgttttaaacatggaatcattgatccattaggcatgttggcaacatggtccaacaaagaggattgttgtaaatggaga |
15484137 |
T |
|
| Q |
117 |
ggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatgacattattattgggaacaaaaagaacaaaacacatt |
216 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
15484136 |
ggagttcattgtaacataaatggcagagtcacaaatatcagtctcccttgttccactgatgatgacatcaccattgggcacaaaaagaacaaaacacatt |
15484037 |
T |
|
| Q |
217 |
g |
217 |
Q |
| |
|
| |
|
|
| T |
15484036 |
g |
15484036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 18064138 - 18063947
Alignment:
| Q |
21 |
gacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggag |
120 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||| || |||||| ||||||| ||||||||| |||||| |||||||||| |||||||||||| |
|
|
| T |
18064138 |
gacaaacaaatactcctttgttttaaacatggactcaccgactcattagacatgttgtcaacatggtccaacaaagaagattgttgtgaatggagaggag |
18064039 |
T |
|
| Q |
121 |
ttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatgacattattattgggaacaaaaagaacaaaacacat |
215 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| ||| ||||||||||||| ||||||| | |||||||| | ||| ||||||||||||||| |
|
|
| T |
18064038 |
ttcaatgtaacatcaatggtagagtaacaaatctcaatctcccttgtttca---ttgatgacttcattattggtatcaacaagaacaaaacacat |
18063947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University