View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_high_36 (Length: 218)
Name: NF17002_high_36
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 2150670 - 2150852
Alignment:
| Q |
18 |
tgatattccattgaacattgctactgtgacagtgaaaaatagtgctcccatgtatgtttgtgcatcctcaatggtagaatgatacatcttggttcgtaga |
117 |
Q |
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| T |
2150670 |
tgatattccattgaacattgctactgtgacagtgaaaaatagtgctcccatgtatgtttgtgcatcctcaatggtagaatgatacatcttggttcgcaga |
2150769 |
T |
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| Q |
118 |
aataacgtcgtcgtcaaggtagctaaataagtaagctgagaagcatgaaagacaacttgcttaatgtcacaaaaagtaaagat |
200 |
Q |
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| T |
2150770 |
aataacgtcgtcgtcaaggtagctaaataagtaagctgagaagcatgaaagacaacttgcttaatgtcacaaaaagtaaagat |
2150852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 2163094 - 2163147
Alignment:
| Q |
18 |
tgatattccattgaacattgctactgtgacagtgaaaaatagtgctcccatgta |
71 |
Q |
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| T |
2163094 |
tgatattccattgaacattgctactgtgactgtgaaaaatagtgctcccatgta |
2163147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 8537070 - 8537126
Alignment:
| Q |
18 |
tgatattccattgaacattgctac---tgtgacagtgaaaaatagtgctcccatgta |
71 |
Q |
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| T |
8537070 |
tgatattccattgaacattgctactcatgtgagtgtgaaaaatagtgctcccatgta |
8537126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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