View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_high_8 (Length: 490)
Name: NF17002_high_8
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 97 - 318
Target Start/End: Complemental strand, 13923506 - 13923284
Alignment:
| Q |
97 |
aacatacaagttaccaaatcgtctcaatnnnnnnn-catacaagttactcaatcaatagactaaagaagctacaacaaatggagtgagctctttcacctg |
195 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13923506 |
aacatacaagttaccaaatcctctcaataaaaaaaacatacaagttactcaatcaatagactaaagaagctacagcaaatggagtgagctctttcacctg |
13923407 |
T |
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| Q |
196 |
aacttttacaattacagctgcaattgagaaagcgaggaagagaatgaagacgcttttcaaatattataaatcttttcaatcttcaaacaaactttattcc |
295 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13923406 |
aacttttacaattaccgctgcaattgagaaagcgaggaagagaatgaagacgcttttcaaatattataaatcttttcaatcttcaaacaaactttattcc |
13923307 |
T |
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| Q |
296 |
attaaacaatttagttattacat |
318 |
Q |
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||||||||||||||||||||||| |
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| T |
13923306 |
attaaacaatttagttattacat |
13923284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 362 - 490
Target Start/End: Complemental strand, 13923240 - 13923112
Alignment:
| Q |
362 |
tcacgaaagagtccaaacttaataagggacaataatgactccacctttaaatatcaaccttgcaattgcacatttgaattactctcaatttgtttataat |
461 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13923240 |
tcacgaaagagtacaaacttaataagggacaataatgactccacctttaaatatcaaccttgcaattgcacatttgaattactctcaatttgtttataat |
13923141 |
T |
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| Q |
462 |
aataatgacatccagtctgatgtttcagt |
490 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13923140 |
aataatgacatccagtctgatgtttcagt |
13923112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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