View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_10 (Length: 447)
Name: NF17002_low_10
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 189 - 435
Target Start/End: Complemental strand, 49951234 - 49950979
Alignment:
| Q |
189 |
ttgcattgaaatataaactgtcatcaaacgggcataatgcgtcgattgcttgaatcaatggaattgaatgaaatccaaatttatg-ctt---ctctctgg |
284 |
Q |
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| T |
49951234 |
ttgcattgaaatataaactgtcatcaaacgggcataatgcgtcgattgcttgaatcaatggaattgaatgaaatccaaattccttacttttactctcttt |
49951135 |
T |
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| Q |
285 |
at-----ccaaatttggaatttttctagtttctcaaaagccttttagtctcaatgtcacgacatgcttgcacgactagggaaataagactggtagagatg |
379 |
Q |
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| T |
49951134 |
attcaaaccaaatttggaatttttctagtttctcaaaagccttttagtctcaatgtcacgacatgcttgcacgactagggaaataagactgggagagatg |
49951035 |
T |
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| Q |
380 |
tttagaatccgcatgaagtgagacttgacaccaattttgctgaatacatggagaat |
435 |
Q |
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| T |
49951034 |
tttagaatccgcatgaagtgagacttgacaccaattttgctgaatacatggagaat |
49950979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 49951435 - 49951259
Alignment:
| Q |
1 |
atatattcatatgtttgatttttt-ggttttctttgtttcactacctgtttatggtttcaaagtaacact--tgctctcgaattccgatcgtgcaacaat |
97 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||||| | |||||||||||||||||||||||||| |
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| T |
49951435 |
atatattcatatgtttgatttttttggttttctttgtttcactacttgtttatggttttaaattaacactcttactctcgaattccgatcgtgcaacaat |
49951336 |
T |
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| Q |
98 |
tccatgcatttacatagtaaacacattgatgtcccggttaaatcaagatcgaacattttatatttaaaactttattt |
174 |
Q |
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| T |
49951335 |
tccatgcatttacatagtaaacacattgatgtcccggttaaatcaagatcgaacattttatatttaaaacttgattt |
49951259 |
T |
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