View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_12 (Length: 423)
Name: NF17002_low_12
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 2151267 - 2150891
Alignment:
| Q |
10 |
agatgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccattt |
109 |
Q |
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| T |
2151267 |
agatgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacataggcaaacaacttggagaagagctggccgatccattt |
2151168 |
T |
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| Q |
110 |
gacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgctta |
209 |
Q |
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| T |
2151167 |
gacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgctta |
2151068 |
T |
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| Q |
210 |
tgaagagaaattcttttgtctacatattcaaagccacacaagtaagtctaaatttctgattttaaaacaatattctatgtccaaaaatctgatcgagtaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2151067 |
tgaagagaaattcttttgtctacatattcaaagccacacaagtgagtctaaatttctgattttaaaacaatattctatgtccaaaaatcttatcgagtaa |
2150968 |
T |
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| Q |
310 |
aggactcctcgtgcagttattcataaaaatgttaaataaagtgtttcatgtgtgggcaccaccaaaaaaattaaaaa |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2150967 |
aggactcctcgtgcagttattcataaaaatgttaaataaagtgtttcatgtgtgggcaccaccaaaaaaaataaaaa |
2150891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 2163545 - 2163303
Alignment:
| Q |
10 |
agatgaaccttataactttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccattt |
109 |
Q |
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|||||||||||||| ||||| ||||||||||||||||| ||| || | |||||||| |||| || |||||||||| ||||| ||| |||| ||| |
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| T |
2163545 |
agatgaaccttatagttttgttactgtcaaggattttgccgaagcatttcagatatttcacataggtcaaaaacttggagatgagctagccaatcctttt |
2163446 |
T |
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| Q |
110 |
gacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgctta |
209 |
Q |
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|||||||| |||| ||| ||| |||||||| |||||||||||| || |||||||||||||||| || | |||||||||||||||||| || ||||||| |
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| T |
2163445 |
gacaagtcgaaatgccatgcaagtgtcttgaccacaaagaaatacggtgttaacaagaaggagcttctgaaggcttgtgctagcagagaatttttgctta |
2163346 |
T |
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| Q |
210 |
tgaagagaaattcttttgtctacatattcaaagccacacaagt |
252 |
Q |
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| T |
2163345 |
tgaagcgaaattcgtttgtccacattttcaaagtcactcaagt |
2163303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 4302471 - 4302604
Alignment:
| Q |
81 |
aacttggagaagagctggccgatccatttgacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaag |
180 |
Q |
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|||||||||| ||||| ||| |||| ||||| || ||||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||| || | |
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| T |
4302471 |
aacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatggtgttaacaagaatgagcttctgaa |
4302570 |
T |
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| Q |
181 |
ggcttgtgctagcagagagttattgcttatgaag |
214 |
Q |
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|||||||||||| | ||| || |||||||||||| |
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| T |
4302571 |
ggcttgtgctagtatagaatttttgcttatgaag |
4302604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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