View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_13 (Length: 414)
Name: NF17002_low_13
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 41481557 - 41481945
Alignment:
| Q |
9 |
gaagaatatgcgtccctctatattttactccacttgttagaattttttcaatgtattctacattttgttggcttatgtgattgttgttagtcactaaatt |
108 |
Q |
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| T |
41481557 |
gaagaatatgtgtccctctatattttactccacttgttagaattttttcaatgtattctacattttgttggcttatgtgattgttgttagtcaataaatt |
41481656 |
T |
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| Q |
109 |
taatttgggcaacaattaaaaggtatttcgnnnnnnngccaacaggatttattaaatttaagctgtagcgcaaatttatccaaaatggatatactattcc |
208 |
Q |
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| T |
41481657 |
caatttgggcaacaattaaaaggtatatcgaaaaaaagccaacaggatttattaaatttaagctgtagcgcaaatttatccaaaatggatatactattcc |
41481756 |
T |
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| Q |
209 |
actctgtgattctaataatat-aaaaagagataattaatttgaatgtattaatttccacgtgtcctattttgattgaagaattgcacaaacagtagcata |
307 |
Q |
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| T |
41481757 |
actctgtgattctaataatattaaaaagagataattaatttgaatgtattaatttccacgtgtcctattttgattgaagaattgcacaaacagtaccata |
41481856 |
T |
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| Q |
308 |
acaagagcatagaatagtatttgaaagaaacagtgcttggtcatcacgtttcttgctgatgctgcgcgcgcacacaaacgcaggcagag |
396 |
Q |
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| T |
41481857 |
acaagagcatagaatagtatttgaaagaaacagtgcttggtcatcacgtttcttgctgatgctgcgcgcgcgcaaaaacgcaggcagag |
41481945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 44506951 - 44507007
Alignment:
| Q |
228 |
ataaaaagagataattaatttgaatgtattaatttccacgtgtcctattttgattga |
284 |
Q |
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| T |
44506951 |
ataaaaagagataattaatttgaatgtattaatttccacatgtcctatattgattga |
44507007 |
T |
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