View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_15 (Length: 375)

Name: NF17002_low_15
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_15
NF17002_low_15
[»] chr1 (8 HSPs)
chr1 (72-357)||(26645942-26646226)
chr1 (249-360)||(25427582-25427693)
chr1 (194-359)||(17621989-17622154)
chr1 (298-349)||(31900465-31900516)
chr1 (176-321)||(11993789-11993933)
chr1 (243-355)||(12085452-12085564)
chr1 (267-350)||(31900539-31900623)
chr1 (267-318)||(26330494-26330545)
[»] chr3 (1 HSPs)
chr3 (263-360)||(21806628-21806725)
[»] chr2 (1 HSPs)
chr2 (249-349)||(19993826-19993926)
[»] chr4 (4 HSPs)
chr4 (193-359)||(25229766-25229932)
chr4 (267-363)||(8321561-8321656)
chr4 (264-350)||(7171303-7171390)
chr4 (301-350)||(7169946-7169995)
[»] chr7 (5 HSPs)
chr7 (257-359)||(27223374-27223476)
chr7 (300-359)||(11728477-11728536)
chr7 (257-350)||(15963198-15963292)
chr7 (183-218)||(15963123-15963158)
chr7 (283-350)||(5486719-5486788)
[»] chr5 (1 HSPs)
chr5 (179-355)||(33699757-33699933)
[»] chr6 (2 HSPs)
chr6 (249-360)||(23905682-23905793)
chr6 (257-355)||(18603348-18603446)
[»] chr8 (3 HSPs)
chr8 (285-350)||(260596-260661)
chr8 (285-350)||(655260-655325)
chr8 (285-350)||(840995-841060)
[»] scaffold0008 (1 HSPs)
scaffold0008 (295-350)||(264267-264322)
[»] scaffold0021 (1 HSPs)
scaffold0021 (264-347)||(156494-156578)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 72 - 357
Target Start/End: Complemental strand, 26646226 - 26645942
Alignment:
Q  72 ctaattggttgaatgtgattgcttataaactatcaaatttattaatagatatagaagttgacacaaatcaatttatactggatcattcaactggggtagc 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||  |||| |||||||||||||    
T  26646226 ctaattggttgaatgtgattgcttataaactatcaaatttattaatagatatagaagatgactcaaatcaattt-tactgattcatccaactggggtagc 26646128  T
Q  172 ccactccccactgaccgtgagatttttcaatctggtgcctaagatacccctctgagattctgcacacattatcttcattctggtttacctggccatacaa 271  Q
    ||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26646127 ccactccccactgactgtgagattttccaatttggtgcctaagatacccctctgagattctgcacacattatcttcattctggtttacttggccatacaa 26646028  T
Q  272 gttttagacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaattgatta 357  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  26646027 gttttagacatgctcttcagactttaactaccacacaatccacctttataactcaaagaagattagtgaagctttacaattgatta 26645942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 25427582 - 25427693
Alignment:
Q  249 ttctggtttacctggccatacaagttttagacatcctcttcaaacttta-gctaccacacaatccacctttataacctaaagaagattagtgaagcttta 347  Q
    ||||||| |||||| |||||| | |||||||||  ||||||  |||||| ||||||||||||||| ||||||||||| ||||| || || ||||||||||    
T  25427582 ttctggtctacctgaccatactatttttagacagtctcttcggactttaagctaccacacaatcctcctttataacc-aaagaggaataatgaagcttta 25427680  T
Q  348 caattgattacat 360  Q
    |||||||||||||    
T  25427681 caattgattacat 25427693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 359
Target Start/End: Complemental strand, 17622154 - 17621989
Alignment:
Q  194 tttttcaatctggtgcctaagatacccctctgagattctgcacacattatcttcatt-ctggtttacctggccatacaagttttagacatcctcttcaaa 292  Q
    |||||||||||||||| | |||||||| ||| ||||| | ||||| || || ||||| || || ||| |  |||||||||||||   || ||| |||  |    
T  17622154 tttttcaatctggtgcatgagataccc-tcttagattttacacactttctcgtcatttctagtctactttaccatacaagttttgagcagccttttcgga 17622056  T
Q  293 ctttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaattgattaca 359  Q
    |||||| |||||||||||||||||||||| | |||||| |||| |||||||||||||| || |||||    
T  17622055 ctttagttaccacacaatccacctttatagcataaagaggattggtgaagctttacaaatgcttaca 17621989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 31900516 - 31900465
Alignment:
Q  298 gctaccacacaatccacctttataacctaaagaagattagtgaagctttaca 349  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  31900516 gctaccacacaatccacctttataacctaaagaggattggtgaaactttaca 31900465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 321
Target Start/End: Complemental strand, 11993933 - 11993789
Alignment:
Q  176 tccccactgaccgtgagatttttcaatctggtgcctaagatacccctctgagattctgcacacattatcttcattctggtttacctggccatacaagttt 275  Q
    |||| |||||| |||| ||||||| || | |||| | |||||||| ||| |||||| | |||| || ||||| || |||| || ||| || |||||||||    
T  11993933 tccctactgactgtgaaatttttcgatttagtgcttgagataccc-tctcagattccgaacactttctcttctttttggtctatctgaccttacaagttt 11993835  T
Q  276 tagacatcctcttcaaactttagctaccacacaatccacctttata 321  Q
    | ||||  |||||||| ||||| ||||||||||||| |||||||||    
T  11993834 tggacaggctcttcaatctttaactaccacacaatctacctttata 11993789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 243 - 355
Target Start/End: Original strand, 12085452 - 12085564
Alignment:
Q  243 tcttcattctggtttacctggccatacaagttttagacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaag 342  Q
    ||||| ||||||| ||| || || ||| |||||| |||| | |||||| | |||| ||||||||||||  ||||||||| | |||| | ||||||||||     
T  12085452 tcttctttctggtctacatgaccttactagttttggacaacatcttcagagtttaactaccacacaattaacctttataccttaaatatgattagtgaaa 12085551  T
Q  343 ctttacaattgat 355  Q
    |||||||||||||    
T  12085552 ctttacaattgat 12085564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 350
Target Start/End: Original strand, 31900539 - 31900623
Alignment:
Q  267 tacaagttttagacatcctcttcaaacttta-gctaccacacaatccacctttataacctaaagaagattagtgaagctttacaa 350  Q
    |||||||||| |||| || ||||| |||||| ||||||||| ||||||| ||||||||||||||| ||| || ||| ||||||||    
T  31900539 tacaagttttggacaaccacttcatactttaagctaccacaaaatccacatttataacctaaagaggataagggaaactttacaa 31900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 26330494 - 26330545
Alignment:
Q  267 tacaagttttagacatcctcttcaaactttagctaccacacaatccaccttt 318  Q
    |||||||||| |||| |||||||| |||||| | ||||||||||||||||||    
T  26330494 tacaagttttggacaacctcttcagactttaacaaccacacaatccaccttt 26330545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 21806725 - 21806628
Alignment:
Q  263 gccatacaagttttagacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaattgattacat 360  Q
    |||| ||||||||| ||||  |||||||||||||||||||||||| ||||||||||||| |||||||||||||| | ||||||||||||||| |||||    
T  21806725 gccacacaagttttggacagtctcttcaaactttagctaccacacgatccacctttataccctaaagaagattactaaagctttacaattgaatacat 21806628  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 249 - 349
Target Start/End: Original strand, 19993826 - 19993926
Alignment:
Q  249 ttctggtttacctggccatacaagttttagacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttac 348  Q
    ||||||| |||||  | ||||||| |||||||| |||||||| | |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  19993826 ttctggtctacctaacaatacaagatttagacaacctcttcagattttagctaccacacaatccaccttaataccctaaagaggattagtgaagctttac 19993925  T
Q  349 a 349  Q
    |    
T  19993926 a 19993926  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 193 - 359
Target Start/End: Complemental strand, 25229932 - 25229766
Alignment:
Q  193 atttttcaatctggtgcctaagatacccctctgagattctgcacacattatcttcatt-ctggtttacctggccatacaagttttagacatcctcttcaa 291  Q
    |||||||||| |||||| | |||||||| ||| ||||| || |||| || ||||| || ||||| || ||| || |||||||| |||| | ||||||||     
T  25229932 atttttcaatatggtgcttgagataccc-tctcagattgtgaacactttgtcttcttttctggtctagctgaccttacaagttctagataacctcttcat 25229834  T
Q  292 actttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaattgattaca 359  Q
     |||||||||||||| |||||||||| ||| ||||||||  ||||||||| |||||||||||||||||    
T  25229833 gctttagctaccacataatccaccttcatatcctaaagagaattagtgaaactttacaattgattaca 25229766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 363
Target Start/End: Original strand, 8321561 - 8321656
Alignment:
Q  267 tacaagttttagacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaattgattacatgat 363  Q
    |||||||||| |||| |||||| | |||||||||| || ||||||||||||||| |||||||||  |||| |||| |||||||| | ||||||||||    
T  8321561 tacaagttttggacaacctctttagactttagctatcatacaatccacctttat-acctaaagataattaatgaaactttacaactcattacatgat 8321656  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 350
Target Start/End: Original strand, 7171303 - 7171390
Alignment:
Q  264 ccatacaagttttagacatcctcttcaaactttag-ctaccacacaatccacctttataacctaaagaagattagtgaagctttacaa 350  Q
    ||||| |||||||  |||||||||||| ||||||  | |||||||||||||||||||||  | ||||  ||||| |||||||||||||    
T  7171303 ccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatattcgaaaggggattactgaagctttacaa 7171390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 7169946 - 7169995
Alignment:
Q  301 accacacaatccacctttataacctaaagaagattagtgaagctttacaa 350  Q
    ||||||||||||||||||||| |||||| | |||||  ||||||||||||    
T  7169946 accacacaatccacctttataccctaaataggattaccgaagctttacaa 7169995  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 27223476 - 27223374
Alignment:
Q  257 tacctggccatacaagttttagacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaattgatt 356  Q
    |||||| || ||||||||||||||| |||||| | ||||||| |||||||||||||||||||||| | |||| ||||||||||||||||| ||| ||| |    
T  27223476 tacctgaccgtacaagttttagacaacctctttagactttagataccacacaatccacctttatagcgtaaataagattagtgaagctttgcaactgaat 27223377  T
Q  357 aca 359  Q
    |||    
T  27223376 aca 27223374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 11728477 - 11728536
Alignment:
Q  300 taccacacaatccacctttataacctaaagaagattagtgaagctttacaattgattaca 359  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||| || |||||    
T  11728477 taccacacaatccacctttatatcctaaagaggattaatgaagctttacaactgtttaca 11728536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 15963198 - 15963292
Alignment:
Q  257 tacctggccatacaagttttagacatcctcttcaaacttt-agctaccacacaatccacctttataacctaaagaagattagtgaagctttacaa 350  Q
    |||||| ||||| ||||||| |||| |||||||| | ||  ||||||||||||||||| ||||||| |||||| | |||||||||||| ||||||    
T  15963198 tacctgaccatataagttttggacagcctcttcagatttggagctaccacacaatccatctttataccctaaaaaggattagtgaagccttacaa 15963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 15963123 - 15963158
Alignment:
Q  183 tgaccgtgagatttttcaatctggtgcctaagatac 218  Q
    |||| |||||||||||||||||||||||||||||||    
T  15963123 tgactgtgagatttttcaatctggtgcctaagatac 15963158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 350
Target Start/End: Complemental strand, 5486788 - 5486719
Alignment:
Q  283 cctcttcaaactttagctaccacacaatccacctttataacct--aaagaagattagtgaagctttacaa 350  Q
    |||||||| |||||| ||||  |||||||||||||||||  ||  ||||||||||| |||||||||||||    
T  5486788 cctcttcagactttaactacggcacaatccacctttatactctaaaaagaagattattgaagctttacaa 5486719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 355
Target Start/End: Original strand, 33699757 - 33699933
Alignment:
Q  179 ccactgaccgtgagatttttcaatctggtgcctaagatacccctctgagattctgcacacattatcttcatt-ctggtttacctggccatacaagtttta 277  Q
    ||||| || |||||||||| |||| ||||| || |||||||| ||| ||||||||||||| || ||||  || || || || |   || ||||| ||||     
T  33699757 ccactaactgtgagattttccaatatggtgtctgagataccc-tctcagattctgcacactttctcttattttctagtctaaccaaccttacaaattttg 33699855  T
Q  278 gacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaattgat 355  Q
    | || |||||||| ||||||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  33699856 ggcagcctcttcagactttagctgctacacaatccacctttataccctaaagaggattagtgaagctttacaattgat 33699933  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 360
Target Start/End: Complemental strand, 23905793 - 23905682
Alignment:
Q  249 ttctggtttacctggccatacaagttttagacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttac 348  Q
    |||||||||||| | || || ||||||| ||||  ||||||| |||||| ||||||||||||||  ||||||| | |||||| ||||||||||||||||     
T  23905793 ttctggtttacccgaccgtaaaagttttggacaatctcttcagactttaactaccacacaatccgtctttataccttaaagaggattagtgaagctttag 23905694  T
Q  349 aattgattacat 360  Q
    || |||||||||    
T  23905693 aactgattacat 23905682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 18603348 - 18603446
Alignment:
Q  257 tacctggccatacaagttttagacatcctcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaattgat 355  Q
    |||||| || || |||| || |||| ||| |||||||||| |||||| ||||||||| ||||| | |||||||| ||||||||||| ||||||| ||||    
T  18603348 tacctgaccttataagtattggacaacctattcaaactttggctaccccacaatccaactttacaccctaaagaggattagtgaagttttacaactgat 18603446  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 260661 - 260596
Alignment:
Q  285 tcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaa 350  Q
    |||||| ||||||||||||||| |||||||||||||| | ||||||  ||||||||||||||||||    
T  260661 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaa 260596  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 655260 - 655325
Alignment:
Q  285 tcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaa 350  Q
    |||||| ||||||||||||||| |||||||||||||| | ||||||  ||||||||||||||||||    
T  655260 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaa 655325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 840995 - 841060
Alignment:
Q  285 tcttcaaactttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaa 350  Q
    |||||| ||||||||||||||| |||||||||||||| | ||||||  ||||||||||||||||||    
T  840995 tcttcatactttagctaccacataatccacctttataccataaagagaattagtgaagctttacaa 841060  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 264267 - 264322
Alignment:
Q  295 ttagctaccacacaatccacctttataacctaaagaagattagtgaagctttacaa 350  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||    
T  264267 ttagctaccacacaatccgcatttataacctaaagaggattagtgaagttttacaa 264322  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 347
Target Start/End: Complemental strand, 156578 - 156494
Alignment:
Q  264 ccatacaagttttagacatcctcttcaaacttta-gctaccacacaatccacctttataacctaaagaagattagtgaagcttta 347  Q
    ||||| ||||||| |||| ||| |||| |||||| ||||||| |||||| |||||||||||||||| | ||||| ||||| ||||    
T  156578 ccatataagttttggacagcctattcagactttaagctaccatacaatcaacctttataacctaaaaaggattaatgaaggttta 156494  T

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