View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_16 (Length: 371)
Name: NF17002_low_16
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 174 - 357
Target Start/End: Complemental strand, 29015717 - 29015534
Alignment:
| Q |
174 |
aattttttatgttactaaaatggtaatgttaaacaaatttgtccaatgaaattaataactatgaaccctttcacttaaaattacagttatagtagtttaa |
273 |
Q |
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| T |
29015717 |
aattttttatgtgactaaaatggtaatgtcaaacaaatttgtccaatgaaattaataactatgaaccctttcacttaaaattacagttatagtagtttaa |
29015618 |
T |
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| Q |
274 |
tttgggttatctttattagttcaagttcatctataacccaaatttgttcaatgaatgaaatgaataactatgaatacttaaaat |
357 |
Q |
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| T |
29015617 |
tttgggttatttttattagtttaagttcatctataacccaaatttgttcaatgaatgaaattaataactatgaacacttaaaat |
29015534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 29016368 - 29016196
Alignment:
| Q |
10 |
aagaatattcatggaggtaacaatataagccaacaattccctnnnnnnnnnntatataagccaaccatattgtagcatgtcagtccatggggcctaccat |
109 |
Q |
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| T |
29016368 |
aagaatattcattgaggtaacaatataagccaacaattcactaaaaaaaatatatataagccaaccatattgtagcatgtcagtccatggggtctaccat |
29016269 |
T |
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| Q |
110 |
taaatcagaaccttataggaataaatggtttgaaactttttctagcagggtggattcatgactaaatttttta |
182 |
Q |
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| T |
29016268 |
taaatcagaaccttataggaataaatggtttgaaactttttctagcggggtggattcatgactaaatttttta |
29016196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 305
Target Start/End: Complemental strand, 29015564 - 29015481
Alignment:
| Q |
218 |
aatgaaattaataactatgaaccctttcacttaaaattacagttatag--tagtttaatttgggttatctttattagttcaagttcatct |
305 |
Q |
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| T |
29015564 |
aatgaaattaataactatgaac------acttaaaatgacagttatataatagttgaatttaggttatttttattagttcaagttcatct |
29015481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 39721531 - 39721580
Alignment:
| Q |
263 |
tagtagtttaatttgggttatctttattagttcaagttcatctataaccc |
312 |
Q |
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| T |
39721531 |
tagtagttttatttgggctatttttattagttcaagttcatttgtaaccc |
39721580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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