View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17002_low_17 (Length: 334)
Name: NF17002_low_17
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 45936290 - 45936523
Alignment:
| Q |
4 |
gtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattggagttatg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936290 |
gtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattggagttatg |
45936389 |
T |
|
| Q |
104 |
ctgagagaattgaaggagctggtgataactcctctgctgcccaatctaataatgtgcttctaggccctattctcttaattctcagtgctcttatttggtc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936390 |
ctgagagaattgaaggagctggtgataactcctctgctgcccaatctaataatgtgcttctaggccctattctcttaattctcagtgctcttatttggtc |
45936489 |
T |
|
| Q |
204 |
actatggttcatcattcaagtaagcatatgcatt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45936490 |
actatggttcatcattcaagtaagcatatgcatt |
45936523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 272 - 318
Target Start/End: Original strand, 45936550 - 45936596
Alignment:
| Q |
272 |
taattactaagttattttgttttgtttgttaatttcaggcagatatg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936550 |
taattactaagttattttgttttgtttgttaatttcaggcagatatg |
45936596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 230
Target Start/End: Original strand, 10561641 - 10561866
Alignment:
| Q |
2 |
aggtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattggagtta |
101 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || || |||||||||| || | | ||||||||| | |||| ||||||| ||||||||||||| |
|
|
| T |
10561641 |
aggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattggagtta |
10561740 |
T |
|
| Q |
102 |
tgctgagagaattgaaggagctggtgataactcctctgctgcccaatctaataatgt-gcttctaggccctattctcttaattctcagtgctcttatttg |
200 |
Q |
| |
|
||| |||| | ||||| | | | ||||| ||||||||||||||| || | |||||||||||| | ||||||||||| | ||||||| |||| |
|
|
| T |
10561741 |
tgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatc----aacctcacttctaggccctgtgctcttaattcttaatgctcttgtttg |
10561836 |
T |
|
| Q |
201 |
gtcactatggttcatcattcaagtaagcat |
230 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
|
|
| T |
10561837 |
gtcactatggtttatcattcaagtaagcat |
10561866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University