View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_18 (Length: 333)

Name: NF17002_low_18
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_18
NF17002_low_18
[»] chr5 (3 HSPs)
chr5 (121-319)||(29636495-29636692)
chr5 (10-116)||(29638748-29638854)
chr5 (205-257)||(12955580-12955632)
[»] chr1 (6 HSPs)
chr1 (121-319)||(33052879-33053077)
chr1 (10-116)||(4816133-4816239)
chr1 (10-116)||(22581631-22581737)
chr1 (10-116)||(34059702-34059808)
chr1 (156-250)||(13391066-13391159)
chr1 (10-94)||(8265691-8265774)
[»] chr3 (2 HSPs)
chr3 (121-274)||(677866-678019)
chr3 (10-116)||(675704-675810)
[»] chr4 (5 HSPs)
chr4 (121-274)||(19141098-19141251)
chr4 (231-319)||(41501001-41501089)
chr4 (10-116)||(41500115-41500221)
chr4 (10-116)||(19141908-19142014)
chr4 (205-257)||(34295310-34295362)
[»] scaffold0049 (1 HSPs)
scaffold0049 (121-319)||(46156-46339)
[»] chr8 (1 HSPs)
chr8 (201-287)||(3694242-3694328)
[»] chr7 (1 HSPs)
chr7 (201-287)||(39051415-39051501)
[»] scaffold0010 (1 HSPs)
scaffold0010 (10-116)||(250401-250507)
[»] chr6 (1 HSPs)
chr6 (205-257)||(3761299-3761350)
[»] chr2 (1 HSPs)
chr2 (10-86)||(40142189-40142265)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 121 - 319
Target Start/End: Complemental strand, 29636692 - 29636495
Alignment:
Q  121 gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  29636692 gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatgatcttgatctttttaaaaaattctccataa-tcc 29636594  T
Q  221 tacaataaccaacacaataacaaactttaagattcaatgagtatgacataaaaaacaacattctttcacattttcatctagtgctactactcctttctt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29636593 tacaataaccaacacaataacaaactttaagattcaatgagtatgaaataaaaaacaacattctttcacattttcatctagtgctactactcctttctt 29636495  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 29638854 - 29638748
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt 109  Q
    ||||||||| |||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||    
T  29638854 aatataagtgacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt 29638755  T
Q  110 gatgtgg 116  Q
    |||||||    
T  29638754 gatgtgg 29638748  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 12955632 - 12955580
Alignment:
Q  205 aattctccataactcctacaataaccaacacaataacaaactttaagattcaa 257  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12955632 aattctccataactcctacaacaaccaacacaataacaaactttaagattcaa 12955580  T

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Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 121 - 319
Target Start/End: Original strand, 33052879 - 33053077
Alignment:
Q  121 gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc 220  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||| ||||||||||||||||||||    
T  33052879 gatccgatggtaactctttcaaattacatgaaacatgttgagaactagatccttgctcatgggatggtaattttcttttaaaaaaattctccataactcc 33052978  T
Q  221 tacaataaccaacacaataacaaactttaagattcaatgagtatgacataaaaaacaacattctttcacattttcatctagtgctactactcctttctt 319  Q
    | |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33052979 tgcaatcaccaacacaataacaaactttaagattcaatgagtatgaaataaaaaacaacattctttcacattttcatctagtgctactactcctttctt 33053077  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 4816239 - 4816133
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt 109  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||    
T  4816239 aatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt 4816140  T
Q  110 gatgtgg 116  Q
    |||||||    
T  4816139 gatgtgg 4816133  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 22581737 - 22581631
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt 109  Q
    |||||||||||||||||||||| | |||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||    
T  22581737 aatataagtcacgagacaatcattcatcccatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt 22581638  T
Q  110 gatgtgg 116  Q
    |||||||    
T  22581637 gatgtgg 22581631  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 34059808 - 34059702
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt 109  Q
    ||||||||| |||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||    
T  34059808 aatataagttacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt 34059709  T
Q  110 gatgtgg 116  Q
    |||||||    
T  34059708 gatgtgg 34059702  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 13391159 - 13391066
Alignment:
Q  156 tgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcctacaataaccaacacaataacaaactttaa 250  Q
    |||||||||||||||||||||||||| ||| ||  |  || | |||||||||||||||| |||||||||| |||| ||||||||| |||||||||    
T  13391159 tgttgagaactagatccttgctcatgcgattgtaattttc-tcttaaaaaattctccattactcctacaacaacccacacaataaaaaactttaa 13391066  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 8265691 - 8265774
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaag 94  Q
    |||||||||||| ||||||||| | || || |||||| ||||| |||||  ||||||||  ||||||| |||||||||| |||||    
T  8265691 aatataagtcacaagacaatcattcattcattcatct-tcatttgattacacaatctagttttcacaaccttcatagcataaaag 8265774  T

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Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 121 - 274
Target Start/End: Original strand, 677866 - 678019
Alignment:
Q  121 gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  677866 gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctgcataactcc 677965  T
Q  221 tacaataaccaacacaataacaaactttaagattcaatgagtatgacataaaaa 274  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  677966 tacaacaaccaacacaataacaaactttaagattcaatgagcatgatataaaaa 678019  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 675704 - 675810
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt 109  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||    
T  675704 aatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt 675803  T
Q  110 gatgtgg 116  Q
    |||||||    
T  675804 gatgtgg 675810  T

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Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 121 - 274
Target Start/End: Complemental strand, 19141251 - 19141098
Alignment:
Q  121 gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc 220  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19141251 gatctgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctgcataactcc 19141152  T
Q  221 tacaataaccaacacaataacaaactttaagattcaatgagtatgacataaaaa 274  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  19141151 tacaacaaccaacacaataacaaactttaagattcaatgagcatgatataaaaa 19141098  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 231 - 319
Target Start/End: Original strand, 41501001 - 41501089
Alignment:
Q  231 aacacaataacaaactttaagattcaatgagtatgacataaaaaacaacattctttcacattttcatctagtgctactactcctttctt 319  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41501001 aacacaataacaaactttaagattcaatgagtatgaaataaaaaacaacattctttcacattttcatctagtgctaccactcctttctt 41501089  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 41500115 - 41500221
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt 109  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||    
T  41500115 aatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt 41500214  T
Q  110 gatgtgg 116  Q
    |||||||    
T  41500215 gatgtgg 41500221  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 19142014 - 19141908
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt 109  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||  |||||||||| |||    
T  19142014 aatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaatgctcgttcaacggtt 19141915  T
Q  110 gatgtgg 116  Q
    |||||||    
T  19141914 gatgtgg 19141908  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 34295362 - 34295310
Alignment:
Q  205 aattctccataactcctacaataaccaacacaataacaaactttaagattcaa 257  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34295362 aattctccataactcctacaacaaccaacacaataacaaactttaagattcaa 34295310  T

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Target: scaffold0049 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 121 - 319
Target Start/End: Complemental strand, 46339 - 46156
Alignment:
Q  121 gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc 220  Q
    ||||||||||||||||||| |||||||||||||   |||||||||||||||||||||| |||||||||  |  |||||||||||||||||||||||||||    
T  46339 gatccgatggtaactcttccaaattacatgaaa---gttgagaactagatccttgctcgtgggatggtaattttctttttaaaaaattctccataactcc 46243  T
Q  221 tacaataaccaacacaataacaaactttaagattcaatgagtatgacataaaaaacaacattctttcacattttcatctagtgctactactcctttctt 319  Q
    |||||||||            ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46242 tacaataac------------aaactctaagattcaatgagtatgaaataaaaaacaacattatttcacattttcatctagtgctactactcctttctt 46156  T

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Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 3694242 - 3694328
Alignment:
Q  201 aaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatgagtatgacataaaaaacaacattctttc 287  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3694242 aaaaaattctccataactcctacaacaaccaacacaataacaaactttaagattcaatgagtatgaaataaaaaacaacattctttc 3694328  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 39051415 - 39051501
Alignment:
Q  201 aaaaaattctccataactcctacaataaccaacacaataacaaactttaagattcaatgagtatgacataaaaaacaacattctttc 287  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  39051415 aaaaaattctccataactcctacaacaaccaacacaataacaaactgtaagattcaatgagtgtgaaataaaaaacaacattctttc 39051501  T

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Target: scaffold0010 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 250401 - 250507
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt 109  Q
    |||||||||||||||||||||| | ||||||||||||| |||| |||||  |||||||||||||||||||||||||||| ||| | |||||||||| |||    
T  250401 aatataagtcacgagacaatcattcatccaatcatctcccatttgattacacaatctagacttcacaatcttcatagcagaaatggctcgttcaacggtt 250500  T
Q  110 gatgtgg 116  Q
    |||||||    
T  250501 gatgtgg 250507  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 3761299 - 3761350
Alignment:
Q  205 aattctccataactcctacaataaccaacacaataacaaactttaagattcaa 257  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  3761299 aattctccataactcctacaacaac-aacacaataacaaactttaagattcaa 3761350  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 40142265 - 40142189
Alignment:
Q  10 aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatag 86  Q
    ||||||||||| |||||||||  | ||||| ||||||| |||| ||||||||||| ||| ||| | |||||||||||    
T  40142265 aatataagtcatgagacaatcgttcatccactcatctcccatttgattatgcaatatagtcttgaaaatcttcatag 40142189  T

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