View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_2 (Length: 725)
Name: NF17002_low_2
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 303 - 569
Target Start/End: Original strand, 29448641 - 29448907
Alignment:
| Q |
303 |
agaaaaaacgagtcatctagaatgaagccaaatgaagttttaggattgtcataaaaaataggaatatttttgttatatatgcacattagtgtttgtgata |
402 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
29448641 |
agaaaaaacgagtcatctaatatgaagccaaatgaagttttaggattgtcatcagaaatatgaatatttttgttatatatgcacattagtgtctgtgata |
29448740 |
T |
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| Q |
403 |
tgaaatttgatctagatggctttggataccattaaacatttgagcaagttgttgatccattaatatgcttttaatttcatattaccttactattagtcat |
502 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29448741 |
tgaaatttgatctagatgactttggataccattaaacacttgagcaagttgttgatccattaatatgattttaatttcatattaccttactattagtcat |
29448840 |
T |
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| Q |
503 |
gccaaatgccaatccacgtggttaagcgcatccataattaagttgcatatgcaatgttctaaatatt |
569 |
Q |
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| T |
29448841 |
gccaaatgccaatccacgtggttaagcgcatccataattaagttgcatatgcaatgttctaaatatt |
29448907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 303 - 514
Target Start/End: Complemental strand, 30259955 - 30259744
Alignment:
| Q |
303 |
agaaaaaacgagtcatctagaatgaagccaaatgaagttttaggattgtcataaaaaataggaatatttttgttatatatgcacattagtgtttgtgata |
402 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30259955 |
agaaaaaacgagtcatctaatatgaagccaaatgaagttttaggattgtcatcagaaatatgaatatttttgttatatatgcacattagtgtttgtgata |
30259856 |
T |
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| Q |
403 |
tgaaatttgatctagatggctttggataccattaaacatttgagcaagttgttgatccattaatatgcttttaatttcatattaccttactattagtcat |
502 |
Q |
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| T |
30259855 |
tgaaatttgatctagatggctttggataccattaaacacttgagcaagttgttgatccattaatatgcttttaatttcatattaccttactattagtcat |
30259756 |
T |
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| Q |
503 |
gccaaatgccaa |
514 |
Q |
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|||||||||||| |
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| T |
30259755 |
gccaaatgccaa |
30259744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 29448523 - 29448657
Alignment:
| Q |
14 |
attatactgtgtgtgctattagtttggtcaattttgattttgttttggttttgtgtagaagcctcgtgatttggcaatttcccttctttaattaatcttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| | |||||||||||||| |||| ||||||||| |
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| T |
29448523 |
attatactgtgtgtgctattagtttggtcaattttgattttgtttttgtgtagtgtagaagcctcctaatttggcaatttcctttct----ttaatcttg |
29448618 |
T |
|
| Q |
114 |
gaatataccctttgacaaaacaagaaaaaacgagtcatc |
152 |
Q |
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| T |
29448619 |
gaatataccctttgacaaaacaagaaaaaacgagtcatc |
29448657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 30260073 - 30259939
Alignment:
| Q |
14 |
attatactgtgtgtgctattagtttggtcaattttgattttgttttggttttgtgtagaagcctcgtgatttggcaatttcccttctttaattaatcttg |
113 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||| || | ||||||||||||| | |||||||||||||| |||| ||||||||| |
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| T |
30260073 |
attatactgcgtgtgctattagtttggtcaattttgatttagtttttgtgtagtgtagaagcctcctaatttggcaatttcctttct----ttaatcttg |
30259978 |
T |
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| Q |
114 |
gaatataccctttgacaaaacaagaaaaaacgagtcatc |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30259977 |
gaatataccctttgacaaaacaagaaaaaacgagtcatc |
30259939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 595 - 647
Target Start/End: Original strand, 29448904 - 29448956
Alignment:
| Q |
595 |
tattattcatattggaagacttttatgcgtaaaaagaatccgatgacatcttc |
647 |
Q |
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| T |
29448904 |
tattattcatatcggaagacttttatgcataaaaagaatccgatgacatcttc |
29448956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 26706612 - 26706665
Alignment:
| Q |
241 |
gcgttcctaattcatccgtctgcagcagaggaaggagcccctcaggagggtggg |
294 |
Q |
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|||||||||||||||||| |||||||| |||||||||| |||| |||||||||| |
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| T |
26706612 |
gcgttcctaattcatccgactgcagcaaaggaaggagctcctctggagggtggg |
26706665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 40736556 - 40736608
Alignment:
| Q |
242 |
cgttcctaattcatccgtctgcagcagaggaaggagcccctcaggagggtggg |
294 |
Q |
| |
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||||||||||||||||| |||||||| |||||||||||| || |||||||||| |
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| T |
40736556 |
cgttcctaattcatccgactgcagcaaaggaaggagcccatctggagggtggg |
40736608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 34249714 - 34249663
Alignment:
| Q |
243 |
gttcctaattcatccgtctgcagcagaggaaggagcccctcaggagggtggg |
294 |
Q |
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||||||| |||||||| |||||||| |||||||||||| || |||||||||| |
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| T |
34249714 |
gttcctagttcatccgactgcagcaaaggaaggagcccgtctggagggtggg |
34249663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 47158720 - 47158773
Alignment:
| Q |
241 |
gcgttcctaattcatccgtctgcagcagaggaaggagcccctcaggagggtggg |
294 |
Q |
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|||||||||||||||||| |||||||| ||| ||||| || || |||||||||| |
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|
| T |
47158720 |
gcgttcctaattcatccgactgcagcaaagggaggagtccgtctggagggtggg |
47158773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 9452459 - 9452406
Alignment:
| Q |
241 |
gcgttcctaattcatccgtctgcagcagaggaaggagcccctcaggagggtggg |
294 |
Q |
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|||||||||||||||||| ||||||| ||||| || |||||| |||||||||| |
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| T |
9452459 |
gcgttcctaattcatccgattgcagcaaaggaatgaacccctctggagggtggg |
9452406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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