View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_21 (Length: 320)

Name: NF17002_low_21
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_21
NF17002_low_21
[»] chr7 (6 HSPs)
chr7 (1-320)||(8313874-8314190)
chr7 (168-310)||(5107999-5108146)
chr7 (168-303)||(6041870-6042009)
chr7 (254-319)||(9732119-9732184)
chr7 (269-320)||(1587373-1587425)
chr7 (248-305)||(16063085-16063144)
[»] chr3 (4 HSPs)
chr3 (151-314)||(3398261-3398423)
chr3 (151-283)||(3386872-3387003)
chr3 (250-312)||(16230403-16230466)
chr3 (178-223)||(11224162-11224207)
[»] chr5 (4 HSPs)
chr5 (250-314)||(24187523-24187587)
chr5 (250-319)||(15373811-15373880)
chr5 (261-313)||(16782020-16782072)
chr5 (241-314)||(26627551-26627628)
[»] chr6 (6 HSPs)
chr6 (162-277)||(22411149-22411271)
chr6 (250-305)||(9869273-9869328)
chr6 (261-310)||(21842130-21842180)
chr6 (248-301)||(23009946-23010000)
chr6 (248-301)||(23778364-23778418)
chr6 (159-222)||(22566744-22566807)
[»] scaffold0427 (1 HSPs)
scaffold0427 (166-313)||(3295-3452)
[»] scaffold0056 (1 HSPs)
scaffold0056 (250-319)||(24533-24603)
[»] scaffold0008 (1 HSPs)
scaffold0008 (250-319)||(233882-233951)
[»] chr8 (3 HSPs)
chr8 (250-314)||(24720026-24720091)
chr8 (240-296)||(24537764-24537820)
chr8 (240-309)||(30785685-30785758)
[»] chr4 (1 HSPs)
chr4 (240-291)||(10979193-10979248)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 8314190 - 8313874
Alignment:
Q  1 ttggtcaaaaccccaaggatattatcctacatcagatgaactgttctccattgatatcttctacaacagctattatcctggtagaataaaacaacaagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  8314190 ttggtcaaaaccccaaggatattatcctacatcagatgaactgttctccattgatatcttctacaacaactgttatcctggtagaataaaacaacaagtt 8314091  T
Q  101 cgtaatcctaaatgcaaaaaactcgagctaaactaattattattacctaggacctaaaactacttatgactctatgactattattactagatgctaatcc 200  Q
    ||||||||||| |||| |   |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8314090 cgtaatcctaagtgcaga---ctcgagctaaactaattattattacctatgacctaaaactacttatgactctatgaccattattactagatgctaatcc 8313994  T
Q  201 taatgctaaaggcaaaattaaaatcgactaactcttatgacctaattttaactagactcgatctaatgtagatattataacaattgttatttttaccacg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8313993 taatgctaaaggcaaaattaaaatcgactaactcttatgacctaattttaactagactcgatctaatgtaggtattataacaattgttatttttaccacg 8313894  T
Q  301 actctctaaaatgccatgca 320  Q
    ||| |||||||| |||||||    
T  8313893 actatctaaaattccatgca 8313874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 310
Target Start/End: Original strand, 5107999 - 5108146
Alignment:
Q  168 gactctatgactattattactagatgctaatcctaatgctaaaggcaaaattaaaatcgactaactctta-----tgacctaattttaactagactcgat 262  Q
    |||||||| ||||||||||||| |||||||   |||| ||||| ||||||||||| | |||| ||||| |     | ||||||||  |||||||||||||    
T  5107999 gactctataactattattactaaatgctaaaattaatcctaaatgcaaaattaaattggactgactctaaataaataacctaattaaaactagactcgat 5108098  T
Q  263 ctaatgtagatattataacaattgttatttttaccacgactctctaaa 310  Q
    |||||||||||||||||||||  ||||||||||| ||||||| |||||    
T  5108099 ctaatgtagatattataacaaccgttatttttactacgactccctaaa 5108146  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 6041870 - 6042009
Alignment:
Q  168 gactctatgactattattactagatgctaatcctaatgctaaaggcaaaattaaaatcgactaactctta-----tgacctaattttaactagactcgat 262  Q
    ||||||||||||||| || ||| |||||||||||||| ||||| || ||||| || | |||| |||||||     | ||||||||  ||||| |||||||    
T  6041870 gactctatgactattgttcctaaatgctaatcctaatcctaaatgcgaaatttaa-tggactgactcttactagataacctaattaaaactatactcgat 6041968  T
Q  263 ctaatgtagatattataacaattgttatttttaccacgact 303  Q
    ||| | ||||||||||||||| | |||||||||| ||||||    
T  6041969 ctactatagatattataacaactattatttttactacgact 6042009  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 9732184 - 9732119
Alignment:
Q  254 agactcgatctaatgtagatattataacaattgttatttttaccacgactctctaaaatgccatgc 319  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||| || ||||||||| |||| ||||    
T  9732184 agactcgatctaaggtagatattataacaatagttttttttactacaactctctaatatgcaatgc 9732119  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 1587373 - 1587425
Alignment:
Q  269 tagatattataacaa-ttgttatttttaccacgactctctaaaatgccatgca 320  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||| |||||    
T  1587373 tagatattataacaaattgttatttttactacgactctctaaaatgcaatgca 1587425  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 16063144 - 16063085
Alignment:
Q  248 ttaactagactcgatctaatgtagatattataacaa--ttgttatttttaccacgactct 305  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||||| ||||||||    
T  16063144 ttaactagactcgatctaatgtaaatattataacaactttgttgtttttactacgactct 16063085  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 314
Target Start/End: Complemental strand, 3398423 - 3398261
Alignment:
Q  151 gacctaaaactacttatgactctatgactattattactagatgctaatcctaatgctaaaggcaaaattaaaatcgactaactcttatgacctaatttta 250  Q
    ||||||| |||| |||||||| |||||||||||||| |||||||||||| |||| || || ||| ||||||| |  | | ||||||||||||||||||||    
T  3398423 gacctaacactatttatgactttatgactattattaatagatgctaatcataattctcaatgcacaattaaa-tgaattgactcttatgacctaatttta 3398325  T
Q  251 actagactcgatctaatgtagatattataacaattgttatttttaccacgactctctaaaatgc 314  Q
    |||||||| ||| |||||||| ||||||||||| | ||||||| || || ||||||| ||||||    
T  3398324 actagacttgatataatgtaggtattataacaacttttattttgactacaactctctgaaatgc 3398261  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 3387003 - 3386872
Alignment:
Q  151 gacctaaaactacttatgactctatgactattattactagatgctaatcctaatgctaaaggcaaaattaaaatcgactaactcttatgacctaatttta 250  Q
    ||||||| |||| |||| ||| ||||||||||||||||||||||||||  |||| || || ||||||||||| |  | | ||||||| || |||||||||    
T  3387003 gacctaacactatttatcactttatgactattattactagatgctaatgataattctcaatgcaaaattaaa-tgaattgactcttacgatctaatttta 3386905  T
Q  251 actagactcgatctaatgtagatattataacaa 283  Q
    ||||||||||||||||  ||| |||||||||||    
T  3386904 actagactcgatctaacataggtattataacaa 3386872  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 16230466 - 16230403
Alignment:
Q  250 aactagactcgatctaatgtagatattataacaa-ttgttatttttaccacgactctctaaaat 312  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||||| || |||| |||||||    
T  16230466 aactatactcgatttaatgtagatattataacaacttgttatttttactaccactccctaaaat 16230403  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 11224162 - 11224207
Alignment:
Q  178 ctattattactagatgctaatcctaatgctaaaggcaaaattaaaa 223  Q
    |||||||||||| ||| |||||||||| ||||| ||||||||||||    
T  11224162 ctattattactaaatgttaatcctaatcctaaatgcaaaattaaaa 11224207  T

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Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 24187587 - 24187523
Alignment:
Q  250 aactagactcgatctaatgtagatattataacaattgttatttttaccacgactctctaaaatgc 314  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||    
T  24187587 aactagactcgatctaatgtagatattataacaaccgttatttttactacgactccctaaaatgc 24187523  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 15373880 - 15373811
Alignment:
Q  250 aactagactcgatctaatgtagatattataacaattgttatttttaccacgactctctaaaatgccatgc 319  Q
    ||||||||||||||||||||||||||||||||||  |||| |||||| ||||||  ||||||||| ||||    
T  15373880 aactagactcgatctaatgtagatattataacaaccgttagttttactacgacttcctaaaatgcaatgc 15373811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 16782072 - 16782020
Alignment:
Q  261 atctaatgtagatattataacaattgttatttttaccacgactctctaaaatg 313  Q
    |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  16782072 atctaatgtaaatattataacaattgttatttttactacgactccctaaaatg 16782020  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 314
Target Start/End: Original strand, 26627551 - 26627628
Alignment:
Q  241 cctaattttaactagactcgatctaatg----tagatattataacaattgttatttttaccacgactctctaaaatgc 314  Q
    |||||| |||||||||||||||||||||    ||| ||||||||||| ||||||| |||| |||||||||||||||||    
T  26627551 cctaatgttaactagactcgatctaatgattgtagttattataacaactgttattattacaacgactctctaaaatgc 26627628  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 277
Target Start/End: Complemental strand, 22411271 - 22411149
Alignment:
Q  162 acttatgactctatgactattatt--actagatgctaatcctaatgctaaaggcaaaattaaaatcgactaactctt-----atgacctaattttaacta 254  Q
    ||||| |||||| |||||||||||  ||||||||||||||||||| ||||| | ||||||||| | |||| ||||||     || ||||||||  |||||    
T  22411271 acttaagactctgtgactattattttactagatgctaatcctaatcctaaatgtaaaattaaattggactgactcttattgaataacctaattaaaacta 22411172  T
Q  255 gactcgatctaatgtagatatta 277  Q
    |||||||||||||||||||||||    
T  22411171 gactcgatctaatgtagatatta 22411149  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Complemental strand, 9869328 - 9869273
Alignment:
Q  250 aactagactcgatctaatgtagatattataacaattgttatttttaccacgactct 305  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||| ||||||||    
T  9869328 aactagactcgatctaatgtaaatattataacaaccgttatttttactacgactct 9869273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 21842180 - 21842130
Alignment:
Q  261 atctaatgtagatattataacaa-ttgttatttttaccacgactctctaaa 310  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  21842180 atctaatgtagatattataacaacttgttatttttaccacgactccctaaa 21842130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 23010000 - 23009946
Alignment:
Q  248 ttaactagactcgatctaatgtagatattataacaa-ttgttatttttaccacga 301  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||    
T  23010000 ttaactagactcaatctattgtagatattataacaacttgttatttttactacga 23009946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 23778364 - 23778418
Alignment:
Q  248 ttaactagactcgatctaatgtagatattataacaa-ttgttatttttaccacga 301  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||    
T  23778364 ttaactagactcaatctattgtagatattataacaacttgttatttttactacga 23778418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 22566807 - 22566744
Alignment:
Q  159 actacttatgactctatgactattattactagatgctaatcctaatgctaaaggcaaaattaaa 222  Q
    |||| ||||||||||||  |||| ||||||| || ||||||||||| ||||| |||||||||||    
T  22566807 actaattatgactctattcctatgattactaaattctaatcctaatcctaaatgcaaaattaaa 22566744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 166 - 313
Target Start/End: Complemental strand, 3452 - 3295
Alignment:
Q  166 atgactctatgactattattactagatgctaatcctaatgctaaaggcaaaattaaaatcgactaactcttatga--------cctaattttaactagac 257  Q
    ||||||||||||||||||| |||| |||||||||||||| ||||| ||||| |  |||| |||| || |||||||        ||||| ||||| |||||    
T  3452 atgactctatgactattatgactacatgctaatcctaatcctaaatgcaaatt--aaatagactgacccttatgattaaacgacctaaatttaagtagac 3355  T
Q  258 tcgatctaatg----tagatattataacaattgttatttttaccacgactctctaaaatg 313  Q
    |||||||||||    ||||||||||||||| |||||||| ||| | ||||||||||||||    
T  3354 tcgatctaatgactatagatattataacaactgttatttatactatgactctctaaaatg 3295  T

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Target: scaffold0056 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 24533 - 24603
Alignment:
Q  250 aactagactcgatctaatgtagatattataacaa-ttgttatttttaccacgactctctaaaatgccatgc 319  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| | ||||| ||||||||| ||||    
T  24533 aactagactcgatctaatgtagatattataaaaacttgttatttttactatgactccctaaaatgcaatgc 24603  T

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Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 233882 - 233951
Alignment:
Q  250 aactagactcgatctaatgtagatattataacaa-ttgttatttttaccacgactctctaaaatgccatgc 319  Q
    ||||||||||||||||| ||||||||||||| || ||||||||||||| |||||| |||||||||| ||||    
T  233882 aactagactcgatctaaagtagatattataaaaatttgttatttttactacgact-tctaaaatgcaatgc 233951  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 314
Target Start/End: Complemental strand, 24720091 - 24720026
Alignment:
Q  250 aactagactcgatctaatgtagatattataacaa-ttgttatttttaccacgactctctaaaatgc 314  Q
    ||||| ||| |||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||    
T  24720091 aactatactggatctaatgtagatgttataacaacttgttatttttactacgactccctaaaatgc 24720026  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 24537764 - 24537820
Alignment:
Q  240 acctaattttaactagactcgatctaatgtagatattataacaattgttatttttac 296  Q
    ||||||||  || ||||||||||||||||||||||||||||||| | ||||||||||    
T  24537764 acctaattaaaattagactcgatctaatgtagatattataacaacttttatttttac 24537820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 30785758 - 30785685
Alignment:
Q  240 acctaattttaactagactcgatctaatg----tagatattataacaattgttatttttaccacgactctctaa 309  Q
    |||||||  ||||||||||||||||| ||    ||| ||||||||||| |||||||||||| ||||||||||||    
T  30785758 acctaatgctaactagactcgatctagtgactatagttattataacaactgttatttttactacgactctctaa 30785685  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 10979193 - 10979248
Alignment:
Q  240 acctaattttaactagactcgatct----aatgtagatattataacaattgttatt 291  Q
    |||||||||||||||||||| ||||    ||||||| |||||||||||||||||||    
T  10979193 acctaattttaactagactcaatctaatgaatgtagttattataacaattgttatt 10979248  T

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