View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_22 (Length: 318)
Name: NF17002_low_22
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 43611381 - 43611682
Alignment:
| Q |
1 |
acacaaaattctttacctattattcaagatcataaagagtgtgcaaatcaggtgaaaacagaggtcccatgtatcaaaccaccgcaatgaccgtatatag |
100 |
Q |
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| T |
43611381 |
acacaaaattctttacctattattcaagatcataaagagtgtgcaaatcaggtgaaaacagaggtcccatgtatcaaaccaccgcaatgaccgtatatag |
43611480 |
T |
|
| Q |
101 |
tttttccttttctatttattctcctctggagccaaaatatatgtatcaagcaaagcnnnnnnngttgttgtactgatctgcactgattgcagttgcattt |
200 |
Q |
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| T |
43611481 |
tttttccttttctatttattctcctctggagccaaaatatatgtatcaagcaaagctttttttgttgttttactgatctacacagattgcagttgcattt |
43611580 |
T |
|
| Q |
201 |
caaatttgtcttagattaaattggcaaaaagatattgcttttgattatggtttatcttatgtttttacttacttaggggaactgatattgtagagtccat |
300 |
Q |
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| T |
43611581 |
caaatttgtcttagattaaattggcaaaaagatattgctttggattatggtttattttatgtttttacttacttaaaggaactgatattgtagagtccat |
43611680 |
T |
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| Q |
301 |
ac |
302 |
Q |
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|| |
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| T |
43611681 |
ac |
43611682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 43618386 - 43618697
Alignment:
| Q |
1 |
acacaaaattctttacctattattcaagatcataaagagtgtgcaaatcaggtgaaaacagaggtcccatgtatcaaaccaccgcaatgaccgtatatag |
100 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
43618386 |
acacaaaattctttacctattattcaagattataatgagtgtgcaaatcaggtgaaaacagaggttccatgtatcaaaccaccgcaatgaccatatatag |
43618485 |
T |
|
| Q |
101 |
tttttccttttctatttattctcctc----------tggagccaaaatatatgtatcaagcaaagcnnnnnnngttgttgtactgatctgcactgattgc |
190 |
Q |
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|||||| ||||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
43618486 |
tttttctttttctatttattatattcccctttaatttggagccaaaatatatgtatcaagcaaagctttttttgttgttgtactgatctacactgattgc |
43618585 |
T |
|
| Q |
191 |
agttgcatttcaaatttgtcttagattaaattggcaaaaagatattgcttttgattatggtttatcttatgtttttacttacttaggggaactgatattg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43618586 |
agttgcatttcaaatttgtcttagattaaattggcaaaaatatattgcttttgattatggtttatcttatgtttttacttacttaggggaactgatattg |
43618685 |
T |
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| Q |
291 |
tagagtccatac |
302 |
Q |
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|||||||||||| |
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| T |
43618686 |
tagagtccatac |
43618697 |
T |
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