View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_24 (Length: 308)

Name: NF17002_low_24
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_24
NF17002_low_24
[»] chr6 (8 HSPs)
chr6 (24-289)||(6458350-6458615)
chr6 (85-224)||(6466372-6466511)
chr6 (76-224)||(6472031-6472179)
chr6 (76-224)||(6506525-6506673)
chr6 (49-224)||(6529238-6529413)
chr6 (133-224)||(6519618-6519709)
chr6 (133-224)||(6497712-6497803)
chr6 (130-224)||(6460866-6460960)
[»] chr7 (3 HSPs)
chr7 (85-233)||(3752828-3752976)
chr7 (133-230)||(4047265-4047362)
chr7 (76-224)||(9664291-9664439)
[»] chr4 (1 HSPs)
chr4 (76-224)||(13535315-13535463)


Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 6458615 - 6458350
Alignment:
Q  24 tcctcctccaaagcaaccgacaaatactccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6458615 tcctcctccaaagcaaccgacaaatactccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctc 6458516  T
Q  124 tcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaact 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6458515 tcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaact 6458416  T
Q  224 cctccctctccctctgctaccctacttgcacctccaacgcttctttcatagctcaagtcttcgacc 289  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6458415 tctccctctccctctgctaccctacttgcacctccaacgcttctttcatagctcaagtcttcgacc 6458350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 6466511 - 6466372
Alignment:
Q  85 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 184  Q
    ||||| |||||  |||||||||||||||| ||||| || ||  | || ||||| |||||||||||||||||||| ||||||||  |||||||||||  ||    
T  6466511 ctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaac 6466412  T
Q  185 ctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    |||| |||||||| || || ||||||||||| ||||||||    
T  6466411 ctgaatacattcatccatatctcatcaaatcttcaaactc 6466372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 6472031 - 6472179
Alignment:
Q  76 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 175  Q
    |||||| ||||||| ||||| || || |||||||| || ||| | || ||  | || ||||| ||||||||||||||||||||  |||| ||| ||||||    
T  6472031 tccactgttctccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatg 6472130  T
Q  176 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    |||||  |||||| |||||||| ||||||||||||||||| ||||||||    
T  6472131 gtgaccaacctgaatacattcatccttacctcatcaaatcatcaaactc 6472179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 6506673 - 6506525
Alignment:
Q  76 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 175  Q
    |||||| | ||||| ||||| || || ||||||||||| ||||| || ||  | || || || |||||||||||||||||||| ||||||||  | ||||    
T  6506673 tccactgtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatg 6506574  T
Q  176 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    ||||  ||||||| ||| |||| ||||||||||||||||| ||||||||    
T  6506573 gtgatgcacctgaatactttcatccttacctcatcaaatcatcaaactc 6506525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 6529413 - 6529238
Alignment:
Q  49 actccttttctcttccctcaagtccactccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctt 148  Q
    |||| |||||| ||||| ||||   |||||||| | || || ||||| || || ||||||||||| ||||| || ||  | || ||||| ||||||||||    
T  6529413 actcattttctattcccacaaggtaactccactgtccttcctgacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctt 6529314  T
Q  149 tcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    |||||||||| ||||||||  | |||||||||  |||||| |||||||| || || ||||||||||| ||| ||||    
T  6529313 tcttccaaaactttgttctcaacaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcagactc 6529238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 6519618 - 6519709
Alignment:
Q  133 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    ||||| |||||||||||||||||||| ||||||||  |||| ||||||  |||||| || ||||| || |||||||| ||||| ||||||||    
T  6519618 ctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaatatattcatccatacctcattaaatcatcaaactc 6519709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 6497803 - 6497712
Alignment:
Q  133 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    ||||| |||||||||||||||||||| ||||||||  | || ||||||  |||||| ||  |||| ||||||||||||||||| ||| ||||    
T  6497803 ctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatcagactc 6497712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 6460866 - 6460960
Alignment:
Q  130 ccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    |||||||| |||||||| ||||||||||| ||||||||  | |||||||||  ||| || ||| |||| ||||||||||||| ||| || |||||    
T  6460866 ccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactttcatccttacctcatcagatcttccaactc 6460960  T

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Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 85 - 233
Target Start/End: Original strand, 3752828 - 3752976
Alignment:
Q  85 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 184  Q
    |||||| ||||||||||||||||||| |  || || || ||  | || ||||| |||||||||||||||||||| |||||||| || |||||||||||||    
T  3752828 ctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacac 3752927  T
Q  185 ctgagtacattcacccttacctcatcaaatcctcaaactcctccctctc 233  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  3752928 ctgaatacattcacccttacctcatcaaatcctcaaacttttccctctc 3752976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 4047362 - 4047265
Alignment:
Q  133 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatcctcaaactcctccct 230  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||   || ||| |||||||||||||||||  |||||||||||||||| |||||    
T  4047362 ctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactcttccct 4047265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 9664291 - 9664439
Alignment:
Q  76 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 175  Q
    |||||| | ||||| || ||||| || ||||||||||| |||||||| ||  | || ||||| |||||||||||||||||||| ||||||||  ||||||    
T  9664291 tccactctcctccccgaaccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatg 9664390  T
Q  176 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    |||||  |  ||| |||||||||||||| ||| ||||||| || |||||    
T  9664391 gtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactc 9664439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 76 - 224
Target Start/End: Original strand, 13535315 - 13535463
Alignment:
Q  76 tccactattctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatg 175  Q
    |||||| | ||||| || ||||| || ||||||||||| |||||||| ||  | || ||||| |||||||||||||||||||| ||||||||  ||||||    
T  13535315 tccactctcctccccgaaccttccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatg 13535414  T
Q  176 gtgacacacctgagtacattcacccttacctcatcaaatcctcaaactc 224  Q
    |||||  |  ||| |||||||||||||| ||| ||||||| || |||||    
T  13535415 gtgaccaatatgaatacattcacccttatctcgtcaaatcgtcgaactc 13535463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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