View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_28 (Length: 293)

Name: NF17002_low_28
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_28
NF17002_low_28
[»] chr3 (9 HSPs)
chr3 (1-263)||(8074581-8074850)
chr3 (42-109)||(25408824-25408891)
chr3 (67-123)||(4741045-4741101)
chr3 (39-103)||(18650959-18651022)
chr3 (39-103)||(18690384-18690447)
chr3 (49-129)||(37537207-37537287)
chr3 (70-112)||(6926008-6926050)
chr3 (70-123)||(12947907-12947960)
chr3 (47-116)||(45966949-45967018)
[»] chr4 (13 HSPs)
chr4 (67-264)||(19846429-19846630)
chr4 (49-129)||(13137120-13137200)
chr4 (77-222)||(30972395-30972544)
chr4 (39-103)||(5727189-5727252)
chr4 (44-111)||(13608922-13608989)
chr4 (39-103)||(5761052-5761115)
chr4 (73-129)||(10552678-10552734)
chr4 (144-256)||(13157340-13157452)
chr4 (199-253)||(22495500-22495554)
chr4 (52-106)||(22653350-22653404)
chr4 (67-129)||(52578024-52578086)
chr4 (50-111)||(12115053-12115114)
chr4 (199-244)||(13609080-13609125)
[»] chr2 (13 HSPs)
chr2 (40-264)||(45131096-45131324)
chr2 (50-115)||(27009252-27009317)
chr2 (51-124)||(40638784-40638857)
chr2 (131-259)||(2167557-2167685)
chr2 (67-114)||(8090523-8090570)
chr2 (67-129)||(20948148-20948210)
chr2 (47-129)||(21578644-21578726)
chr2 (199-250)||(12606776-12606827)
chr2 (199-265)||(30505615-30505681)
chr2 (49-106)||(38409050-38409107)
chr2 (49-129)||(841527-841607)
chr2 (73-129)||(24739857-24739913)
chr2 (50-126)||(36176622-36176698)
[»] chr1 (11 HSPs)
chr1 (67-224)||(40708441-40708601)
chr1 (46-114)||(23997167-23997235)
chr1 (67-129)||(26260791-26260853)
chr1 (41-114)||(52626561-52626634)
chr1 (51-129)||(15259440-15259518)
chr1 (67-114)||(32160124-32160171)
chr1 (67-129)||(27363752-27363814)
chr1 (187-250)||(36098741-36098804)
chr1 (71-117)||(44675147-44675193)
chr1 (70-112)||(48973708-48973750)
chr1 (186-226)||(31069584-31069624)
[»] chr8 (5 HSPs)
chr8 (39-103)||(33282881-33282945)
chr8 (42-117)||(8462485-8462560)
chr8 (144-223)||(39435531-39435610)
chr8 (73-130)||(38685799-38685856)
chr8 (201-249)||(43776134-43776182)
[»] chr5 (9 HSPs)
chr5 (67-123)||(16610614-16610670)
chr5 (50-114)||(26778699-26778763)
chr5 (51-128)||(31706406-31706483)
chr5 (62-122)||(704507-704567)
chr5 (50-104)||(32252184-32252238)
chr5 (67-103)||(29651796-29651832)
chr5 (144-259)||(19315081-19315196)
chr5 (70-129)||(29994658-29994717)
chr5 (70-112)||(21042006-21042048)
[»] chr7 (5 HSPs)
chr7 (50-129)||(17116383-17116462)
chr7 (67-114)||(47543481-47543528)
chr7 (44-111)||(9628257-9628324)
chr7 (199-244)||(9628121-9628166)
chr7 (49-129)||(40616713-40616793)
[»] chr6 (8 HSPs)
chr6 (67-117)||(11324519-11324569)
chr6 (62-259)||(17292758-17292958)
chr6 (67-114)||(32196814-32196861)
chr6 (183-253)||(9907070-9907140)
chr6 (50-115)||(34714969-34715034)
chr6 (199-259)||(5667498-5667558)
chr6 (70-112)||(5667365-5667407)
chr6 (50-103)||(16853073-16853126)
[»] scaffold0795 (1 HSPs)
scaffold0795 (46-129)||(2198-2281)
[»] scaffold0047 (2 HSPs)
scaffold0047 (67-115)||(64284-64332)
scaffold0047 (183-223)||(64404-64444)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 8074581 - 8074850
Alignment:
Q  1 gctacaggctatacaagaacaaaatagaactgaataggagaaaataaaaattagcctatatccagtatggtaaacggactaag---ccagcacccatgat 97  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||   ||| ||||||||||    
T  8074581 gctacaggctatgcaagaacaaaatagaactgaataggagaaaataaaaactagtctatatctagtatggtaaacggactaagccaccaccacccatgat 8074680  T
Q  98 aattgaaggaaagagaagcatacttcacctt----cgcatgaaagtttgagacttaattttgtcaacaatctgcataactaagcattatttgccattaaa 193  Q
    |||||||||||||||||||||||||||| ||    | ||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||||||    
T  8074681 aattgaaggaaagagaagcatacttcacattcaaccacatgaaagtttgagacttaatcttgtcaacaatctgcacaactgagcattctttgccattaaa 8074780  T
Q  194 taacatgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctgtaatattgagcac 263  Q
    |||| ||||||||||||| ||||||| ||  |||||||||||||| ||||||||||||||||||||||||    
T  8074781 taacctgttatttctctccttccaaaattttcaaaatgttgcaaaccaaatgacctgtaatattgagcac 8074850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 25408891 - 25408824
Alignment:
Q  42 aaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaa 109  Q
    |||||| |||||||||||| |||  |||||||| ||||||||||| || |||||||||||||||||||    
T  25408891 aaataacaattagcctatacccaacatggtaaatggactaagccaccaaccatgataattgaaggaaa 25408824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 4741101 - 4741045
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttc 123  Q
    |||||||||||||||||||| |||||||| |||||||||| |||||||  |||||||    
T  4741101 atggtaaacggactaagccatcacccatggtaattgaagggaagagaaatatacttc 4741045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 18651022 - 18650959
Alignment:
Q  39 agaaaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattga 103  Q
    ||||||||| ||||||| |||| |||||||||||||| |||| ||||| || |||||||||||||    
T  18651022 agaaaataacaattagc-tatacccagtatggtaaacagacttagccatcaaccatgataattga 18650959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 18690447 - 18690384
Alignment:
Q  39 agaaaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattga 103  Q
    ||||||||| ||||||| |||| |||||||||||||| |||| ||||| || |||||||||||||    
T  18690447 agaaaataacaattagc-tatacccagtatggtaaacagactcagccatcaaccatgataattga 18690384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 37537207 - 37537287
Alignment:
Q  49 aattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||||||| | ||||||| ||||||  ||||||| || ||||||||| | |||| |||||||||  |||||||||||    
T  37537207 aattagcctataccgagtatggaaaacgggttaagccaccaaccatgataagtaaagggaagagaagcgaacttcaccttc 37537287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 6926050 - 6926008
Alignment:
Q  70 gtaaacggactaagccagcacccatgataattgaaggaaagag 112  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  6926050 gtaaacggactaagccaccacccatgataattaaagggaagag 6926008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 12947907 - 12947960
Alignment:
Q  70 gtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttc 123  Q
    ||||||||||||| ||| |||||||  ||||||||||||||||| ||| |||||    
T  12947907 gtaaacggactaaaccaccacccatagtaattgaaggaaagagaggcaaacttc 12947960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 45966949 - 45967018
Alignment:
Q  47 aaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagc 116  Q
    |||||||||||||| | || |||||||||||| | ||||| || |||||||| ||||| | |||||||||    
T  45966949 aaaattagcctataccaagaatggtaaacggatttagccaccaaccatgatagttgaaaggaagagaagc 45967018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 67 - 264
Target Start/End: Complemental strand, 19846630 - 19846429
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcacctt----cgcatgaaagtttgagacttaattttgtcaacaa 162  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||    | ||||||||| ||||||||||| ||||||||||    
T  19846630 atggtaaacggactaatccaccacccatgataattgaagggaagagaagcatacttcacctttaaacacatgaaagtatgagacttaatcttgtcaacaa 19846531  T
Q  163 tctgcataactaagcattatttgccattaaataacatgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctgtaatattgagca 262  Q
    ||||||||| | | |||| ||| |||| ||||||| | |||||| | || || || |||| ||||| | ||||||| || ||||||| ||| || |||||    
T  19846530 tctgcataattgaccattctttaccatcaaataacctattatttatttcctttcatattttccaaactattgcaaaccatatgacctctaaaatagagca 19846431  T
Q  263 cc 264  Q
    ||    
T  19846430 cc 19846429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 13137200 - 13137120
Alignment:
Q  49 aattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||||||  | |||| |||||||||||||||||| || ||||||||||||||| |||||| |||| | |||||||||    
T  13137200 aattagcctatgcctagtaaggtaaacggactaagccaccaaccatgataattgaagaaaagagtagcaaatttcaccttc 13137120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 30972395 - 30972544
Alignment:
Q  77 gactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttcg----catgaaagtttgagacttaattttgtcaacaatctgcataac 172  Q
    |||||||||| || |||||||| ||||||| |||||||| | | ||| |||||     |||||||||  | ||||||||||| ||||| | ||||||||     
T  30972395 gactaagccaccagccatgatagttgaagggaagagaaggaaatttcgccttcagccacatgaaagtcagcgacttaattttatcaaccacctgcataat 30972494  T
Q  173 taagcattatttgccattaaataacatgttatttctctcattccaaattt 222  Q
    | |||| | |||||||||||| | |||||||||||| || ||||||||||    
T  30972495 tgagcactctttgccattaaagagcatgttatttctttctttccaaattt 30972544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 5727252 - 5727189
Alignment:
Q  39 agaaaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattga 103  Q
    ||||||||| ||||||| |||| |||||||||||||| |||||||||| || |||||||||||||    
T  5727252 agaaaataacaattagc-tatacccagtatggtaaacagactaagccatcaaccatgataattga 5727189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 13608922 - 13608989
Alignment:
Q  44 ataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaaga 111  Q
    |||| ||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||||| ||||    
T  13608922 ataacaattaacctatgtcaagtatggtaaacggactaagccaccaaccatggtaattgaagggaaga 13608989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 5761115 - 5761052
Alignment:
Q  39 agaaaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattga 103  Q
    ||||||||| ||||||| |||| |||||||||||||| |||| ||||| || |||||||||||||    
T  5761115 agaaaataacaattagc-tatacccagtatggtaaacagactcagccatcaaccatgataattga 5761052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 10552734 - 10552678
Alignment:
Q  73 aacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||||||||| || |||||||| || |||| ||||| ||||||||||||||||    
T  10552734 aacggactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttc 10552678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 13157452 - 13157340
Alignment:
Q  144 gacttaattttgtcaacaatctgcataactaagcattatttgccattaaataacatgttatttctctcattccaaatttcccaaaatgttgcaaatcaaa 243  Q
    ||||| |||||||| || | |||||||| | ||| || |||  ||||||| | | |||| ||||| || ||||| |||||||| | ||||||||| ||||    
T  13157452 gacttcattttgtccaccacctgcataattgagctttcttttgcattaaaaatcttgttgtttctttctttccatatttcccacactgttgcaaaccaaa 13157353  T
Q  244 tgacctgtaatat 256  Q
    |||||||||||||    
T  13157352 tgacctgtaatat 13157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 22495500 - 22495554
Alignment:
Q  199 tgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctgtaa 253  Q
    ||||||||||||| ||| |||||||||| | |||||||||||||||  |||||||    
T  22495500 tgttatttctctctttctaaatttcccacactgttgcaaatcaaatagcctgtaa 22495554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 22653404 - 22653350
Alignment:
Q  52 tagcctatatccagtatggtaaacggactaagccagcacccatgataattgaagg 106  Q
    |||||||||  ||| ||||||||| |||||||||| || ||||||||||||||||    
T  22653404 tagcctatactcagcatggtaaacagactaagccaccaaccatgataattgaagg 22653350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 52578086 - 52578024
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||| ||||| ||||||||| || |||||||||||||||| ||||||  || |||||||||||    
T  52578086 atggcaaacgcactaagccaccaaccatgataattgaagggaagagatacaaacttcaccttc 52578024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 12115114 - 12115053
Alignment:
Q  50 attagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaaga 111  Q
    ||||||||||| | || |||||||||||||| |||||  | |||||||||||||||| ||||    
T  12115114 attagcctataccgaggatggtaaacggactgagccacaaaccatgataattgaagggaaga 12115053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 13609080 - 13609125
Alignment:
Q  199 tgttatttctctcattccaaatttcccaaaatgttgcaaatcaaat 244  Q
    ||||||||||||| |||||||||||||| | ||||||||| |||||    
T  13609080 tgttatttctctctttccaaatttcccacactgttgcaaaccaaat 13609125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 264
Target Start/End: Original strand, 45131096 - 45131324
Alignment:
Q  40 gaaaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttcg----catga 135  Q
    |||||||  |||||||| ||  |||| |||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||     |||||    
T  45131096 gaaaatagcaattagccaatgcccagcatggtaaatggactaagccaccacccatgataattgaagggaagagaagcatatttccccttcaaccacatga 45131195  T
Q  136 aagtttgagacttaattttgtcaacaatctgcataactaagcattatttgccattaaataacatgttatttctctcattccaaatttcccaaaatgttgc 235  Q
    ||||||| ||| |||| ||||| |||||||||| |||| ||||   |||  | |||||||||||||||||||| || ||||| |||| ||||| |||||     
T  45131196 aagtttgcgacataatcttgtcgacaatctgcacaactgagcacactttatcgttaaataacatgttatttctttccttccatattttccaaactgttgt 45131295  T
Q  236 aaatcaaatgacctgtaatattgagcacc 264  Q
    |||    ||||||||||| || |||||||    
T  45131296 aaacattatgacctgtaaaatagagcacc 45131324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 27009317 - 27009252
Alignment:
Q  50 attagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaag 115  Q
    |||||||||| |||||||||||||||||||||||||| || ||||| |||||||||| ||||||||    
T  27009317 attagcctatgtccagtatggtaaacggactaagccaccaaccatggtaattgaagggaagagaag 27009252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 40638784 - 40638857
Alignment:
Q  51 ttagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttca 124  Q
    ||||||||| ||||  || ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||    
T  40638784 ttagcctatgtccaaaatcgtaaacggactaagccaccacccatggtaattgaagggaagagaagcatacttca 40638857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 2167557 - 2167685
Alignment:
Q  131 catgaaagtttgagacttaattttgtcaacaatctgcataactaagcattatttgccattaaataacatgttatttctctcattccaaatttcccaaaat 230  Q
    ||||||||| ||||||||||| || || |||| |||||||| | |||| | |||||||||||||||| ||||||| || || ||||| ||||||||||      
T  2167557 catgaaagtgtgagacttaatcttctcgacaacctgcataattgagcaatctttgccattaaataacctgttattcctttctttccatatttcccaaaca 2167656  T
Q  231 gttgcaaatcaaatgacctgtaatattga 259  Q
    |  ||||| || ||||||||||| |||||    
T  2167657 gcagcaaaccagatgacctgtaacattga 2167685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 8090570 - 8090523
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaa 114  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  8090570 atggtaaacggactaagccaccacccatgataattgaagggaagagaa 8090523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 20948210 - 20948148
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||||||||||||||| |||||||| ||||||| |  |||||||| ||||||| |||||    
T  20948210 atggtaaacggactaagccaccacccatggtaattgaggcgaagagaagaatacttcgccttc 20948148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 21578644 - 21578726
Alignment:
Q  47 aaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    ||||||| |||||| | || |||||||||||| | ||||| || |||||||| ||||||||||||||||| | | ||||||||    
T  21578644 aaaattaacctataccaagaatggtaaacggattgagccaccatccatgatagttgaaggaaagagaagcgttcctcaccttc 21578726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 12606827 - 12606776
Alignment:
Q  199 tgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctg 250  Q
    |||| ||||| || |||||||||||||||| ||||||||||||||| |||||    
T  12606827 tgttgtttctttctttccaaatttcccaaactgttgcaaatcaaataacctg 12606776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 30505681 - 30505615
Alignment:
Q  199 tgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctgtaatattgagcaccg 265  Q
    |||||||||| || ||||||||||| ||||  || ||||| ||||| |||||||||||||| |||||    
T  30505681 tgttatttctttctttccaaatttctcaaacagtagcaaaccaaataacctgtaatattgaacaccg 30505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 38409107 - 38409050
Alignment:
Q  49 aattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaagg 106  Q
    |||||||||||| | || |||||||||||||| | ||| || ||||||||||||||||    
T  38409107 aattagcctatacctagaatggtaaacggactgaaccaccaaccatgataattgaagg 38409050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 841527 - 841607
Alignment:
Q  49 aattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||||||  | ||||  || ||| |||||||||| || |||||||| || |||| ||||| ||||||||||||||||    
T  841527 aattagcctatgcctagtaaagtgaacagactaagccaccaaccatgatagttaaagggaagagtagcatacttcaccttc 841607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 24739913 - 24739857
Alignment:
Q  73 aacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||||||||| || |||||||| || |||| ||| | ||||||||||||||||    
T  24739913 aacggactaagccaccaaccatgatagttaaagggaagggtagcatacttcaccttc 24739857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 36176622 - 36176698
Alignment:
Q  50 attagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcacc 126  Q
    ||||||||||| |||  |||||||| |||||||  || || |||||||||||||||  |||||||||| | ||||||    
T  36176622 attagcctatacccaacatggtaaatggactaaaacaccaaccatgataattgaagagaagagaagcaaatttcacc 36176698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 40708441 - 40708601
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcacct---tcgcatgaaagtttgagacttaattttgtcaacaat 163  Q
    |||||||||||||||||||| |   ||||||||||||||| ||||||| |||| |||||||    | |||||||||  |||||||||||||||| || |     
T  40708441 atggtaaacggactaagccaccgaacatgataattgaagggaagagaaacatatttcacctcaaccacatgaaagtcagagacttaattttgtctaccac 40708540  T
Q  164 ctgcataactaagcattatttgccattaaataacatgttatttctctcattccaaatttcc 224  Q
    ||||| ||    ||||| ||| |||||||||||| |||||||||| || || |||||||||    
T  40708541 ctgcacaatctggcattctttaccattaaataacttgttatttctttcttttcaaatttcc 40708601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 23997235 - 23997167
Alignment:
Q  46 aaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaa 114  Q
    ||||||||||||||||| || |||||||| ||||||||||| || ||||||||||| ||||||||||||    
T  23997235 aaaaattagcctatatcaaggatggtaaaaggactaagccatcagccatgataattaaaggaaagagaa 23997167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 26260853 - 26260791
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||| |||||    
T  26260853 atggtaaatggactaagccaccacccatgataattgaagggaagagaagcaaacttcgccttc 26260791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 52626634 - 52626561
Alignment:
Q  41 aaaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaa 114  Q
    ||||||| ||||||||||||  || ||||||||| ||||||||||| || |||||||||||||||| |||||||    
T  52626634 aaaataacaattagcctatacgcaatatggtaaatggactaagccaccaaccatgataattgaagggaagagaa 52626561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 15259518 - 15259440
Alignment:
Q  51 ttagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||||  ||||||||||||||||||||||| | |||||||| ||||||| || |||||||  ||||||| |||||    
T  15259518 ttagcctatgcccagtatggtaaacggactaagctaccacccatggtaattgaggggaagagaaatatacttcgccttc 15259440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 32160171 - 32160124
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaa 114  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  32160171 atggtaaacggactaagccaccaccaatggtaattgaaggaaagagaa 32160124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 27363752 - 27363814
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    ||||||||||||||||||||  ||||||| ||||||| |||||||||||  |||||| |||||    
T  27363752 atggtaaacggactaagccacaacccatggtaattgagggaaagagaagagtacttcgccttc 27363814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 36098741 - 36098804
Alignment:
Q  187 cattaaataacatgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctg 250  Q
    ||||||| |||||||||||||| || ||||||| ||||||||  || ||||| |||||||||||    
T  36098741 cattaaacaacatgttatttctttctttccaaaattcccaaaccgtagcaaaccaaatgacctg 36098804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 44675193 - 44675147
Alignment:
Q  71 taaacggactaagccagcacccatgataattgaaggaaagagaagca 117  Q
    |||||||||||||||| || |||||||||||||||| ||| ||||||    
T  44675193 taaacggactaagccaccaaccatgataattgaagggaagggaagca 44675147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 48973750 - 48973708
Alignment:
Q  70 gtaaacggactaagccagcacccatgataattgaaggaaagag 112  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  48973750 gtaaacggactaagccaccacccatgataattaaagggaagag 48973708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 31069624 - 31069584
Alignment:
Q  186 ccattaaataacatgttatttctctcattccaaatttccca 226  Q
    ||||||||||||||||||| ||| || ||||||||||||||    
T  31069624 ccattaaataacatgttatatctttctttccaaatttccca 31069584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 33282945 - 33282881
Alignment:
Q  39 agaaaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattga 103  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||||| || |||||||||||||    
T  33282945 agaaaataacaattaacctatattcagtatggtaaacggactaagccaccaaccatgataattga 33282881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 8462485 - 8462560
Alignment:
Q  42 aaataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagca 117  Q
    |||||| ||||||||||| | ||  ||||||||| |||||||||| || |||||||||||||||| ||||||||||    
T  8462485 aaataacaattagcctatgttcatcatggtaaacagactaagccaccaaccatgataattgaagggaagagaagca 8462560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 39435531 - 39435610
Alignment:
Q  144 gacttaattttgtcaacaatctgcataactaagcattatttgccattaaataacatgttatttctctcattccaaatttc 223  Q
    |||||||| || ||||| | ||||| |||  |||||| |||| |||| ||||||||||||||||| || |||||||||||    
T  39435531 gacttaatcttatcaaccacctgcaaaaccgagcattctttgtcattgaataacatgttatttctttctttccaaatttc 39435610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 38685856 - 38685799
Alignment:
Q  73 aacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttcg 130  Q
    |||||||||| ||| || |||||||| || |||| ||||| |||||||||||||||||    
T  38685856 aacggactaatccaccaaccatgatagttaaagggaagagtagcatacttcaccttcg 38685799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 43776182 - 43776134
Alignment:
Q  201 ttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacct 249  Q
    |||||||| || |||||||||||||| | ||||||||| ||||||||||    
T  43776182 ttatttctttctttccaaatttcccacactgttgcaaaccaaatgacct 43776134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 16610670 - 16610614
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttc 123  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||| || |||||    
T  16610670 atggtaaacggactaagccaccacccatgataattgaagggaagagaaacaaacttc 16610614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 26778699 - 26778763
Alignment:
Q  50 attagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaa 114  Q
    |||||||||| || || |||||||||||||||| ||| || ||||||||||||||||||||||||    
T  26778699 attagcctatgtcgagcatggtaaacggactaaaccaccaaccatgataattgaaggaaagagaa 26778763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 128
Target Start/End: Original strand, 31706406 - 31706483
Alignment:
Q  51 ttagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcacctt 128  Q
    |||||||||  ||| ||||||||||||||||||||| |||||||| ||||||| || |||||||  ||||||| ||||    
T  31706406 ttagcctatgcccaatatggtaaacggactaagccaccacccatggtaattgaggggaagagaaatatacttcgcctt 31706483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 704507 - 704567
Alignment:
Q  62 ccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatactt 122  Q
    |||||||||||||||||||||| || ||||||||||||||||| | |||| ||||| ||||    
T  704507 ccagtatggtaaacggactaagtcaccacccatgataattgaatggaagaaaagcaaactt 704567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 32252238 - 32252184
Alignment:
Q  50 attagcctatatccagtatggtaaacggactaagccagcacccatgataattgaa 104  Q
    ||||||||||| | || |||||||||||||||||||| || ||||||||||||||    
T  32252238 attagcctataccgagaatggtaaacggactaagccaccaaccatgataattgaa 32252184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 29651796 - 29651832
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattga 103  Q
    |||||||||||||||||||| ||||||||||||||||    
T  29651796 atggtaaacggactaagccaccacccatgataattga 29651832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 19315081 - 19315196
Alignment:
Q  144 gacttaattttgtcaacaatctgcataactaagcattatttgccattaaataacatgttatttctctcattccaaatttcccaaaatgttgcaaatcaaa 243  Q
    |||||||| || ||||| | |||||| ||  | |||| |||||| || |||||| |||||||||| || ||||||||||||||||  || ||||| ||||    
T  19315081 gacttaatcttatcaaccacctgcattaccgaccattctttgcctttgaataacctgttatttctttctttccaaatttcccaaacggtagcaaaccaaa 19315180  T
Q  244 tgacctgtaatattga 259  Q
    | | |||| |||||||    
T  19315181 taatctgtcatattga 19315196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 29994717 - 29994658
Alignment:
Q  70 gtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    ||||||||| ||||||| || |||||||||||||||| |||| ||| | |||||||||||    
T  29994717 gtaaacggattaagccaccaaccatgataattgaagggaagaaaaggaaacttcaccttc 29994658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 21042048 - 21042006
Alignment:
Q  70 gtaaacggactaagccagcacccatgataattgaaggaaagag 112  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  21042048 gtaaacggactaagccaccacccatgataattaaagggaagag 21042006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 17116383 - 17116462
Alignment:
Q  50 attagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||| |||| ||| |||||||||| |||||||||| || ||||||||| |||||| |||||||||||| ||| |||||    
T  17116383 attagcttatacccaatatggtaaacagactaagccaccaaccatgataactgaagggaagagaagcatatttcgccttc 17116462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 47543528 - 47543481
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaa 114  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  47543528 atggtaaacggactaagccatcacccatgataattgaagggaagagaa 47543481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 9628324 - 9628257
Alignment:
Q  44 ataaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaaga 111  Q
    |||| ||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||||| ||||    
T  9628324 ataacaattaacctatgtcaagtatggtaaacggactaagccaccaaccatggtaattgaagggaaga 9628257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 9628166 - 9628121
Alignment:
Q  199 tgttatttctctcattccaaatttcccaaaatgttgcaaatcaaat 244  Q
    ||||||||||||| |||||||||||||| | ||||||||| |||||    
T  9628166 tgttatttctctctttccaaatttcccacactgttgcaaaccaaat 9628121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 40616713 - 40616793
Alignment:
Q  49 aattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    |||||||||||  | ||||  || |||||||||||||| || ||| |||| || |||| ||||| ||||||||||||||||    
T  40616713 aattagcctatgcctagtaaagtgaacggactaagccaccaaccaagatagttaaagggaagagtagcatacttcaccttc 40616793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 11324569 - 11324519
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaagca 117  Q
    |||| ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  11324569 atggcaaacggactaagccaccacccatgataattgaagggaagagaagca 11324519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 259
Target Start/End: Original strand, 17292758 - 17292958
Alignment:
Q  62 ccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcacctt----cgcatgaaagtttgagacttaattttgtc 157  Q
    |||| ||| |||||||||||||||| || |||||||||||||||| |||||||||| | ||  | ||    | |||||| | | |||||||||| ||       
T  17292758 ccagcatgataaacggactaagccatcaaccatgataattgaagggaagagaagcaaatttggcgttcaaccacatgaatgctagagacttaatcttaat 17292857  T
Q  158 aacaatctgcataactaagcattatttgccattaaataacatgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctgtaatatt 257  Q
     || | ||||||||   | |||| ||||||||||||| ||||||||||||| || |||||||||||||| |  |||||||| ||||| ||||| || |||    
T  17292858 gaccacctgcataatcgatcattctttgccattaaat-acatgttatttctttctttccaaatttcccatacggttgcaaaccaaataacctgaaagatt 17292956  T
Q  258 ga 259  Q
    ||    
T  17292957 ga 17292958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 32196814 - 32196861
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaa 114  Q
    |||||||||||||||||||| |||||||| |||||||||| |||||||    
T  32196814 atggtaaacggactaagccatcacccatgttaattgaagggaagagaa 32196861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 9907140 - 9907070
Alignment:
Q  183 ttgccattaaataacatgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctgtaa 253  Q
    ||||||||||||||| |||||||||| || ||||||||||||||  | |||||||| ||||  ||||||||    
T  9907140 ttgccattaaataacctgttatttctttctttccaaatttcccacgaagttgcaaaccaaagaacctgtaa 9907070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 34715034 - 34714969
Alignment:
Q  50 attagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaag 115  Q
    ||||| |||| ||||||||||||||| |||||||||| || ||||| ||||||| || ||||||||    
T  34715034 attagtctatgtccagtatggtaaacagactaagccaccaaccatggtaattgatgggaagagaag 34714969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 5667498 - 5667558
Alignment:
Q  199 tgttatttctctcattccaaatttcccaaaatgttgcaaatcaaatgacctgtaatattga 259  Q
    ||||||| || || |||||||||||||||| ||||||||| ||||| |||||||| |||||    
T  5667498 tgttattcctttccttccaaatttcccaaactgttgcaaaccaaataacctgtaaaattga 5667558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 5667365 - 5667407
Alignment:
Q  70 gtaaacggactaagccagcacccatgataattgaaggaaagag 112  Q
    ||||||||||||| ||| || ||||||||||||||||||||||    
T  5667365 gtaaacggactaatccaccaaccatgataattgaaggaaagag 5667407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 16853126 - 16853073
Alignment:
Q  50 attagcctatatccagtatggtaaacggactaagccagcacccatgataattga 103  Q
    |||||||||| ||||  |||||||||||||||||||| |||||||  |||||||    
T  16853126 attagcctatgtccaaaatggtaaacggactaagccaccacccatagtaattga 16853073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 2281 - 2198
Alignment:
Q  46 aaaaattagcctatatccagtatggtaaacggactaagccagcacccatgataattgaaggaaagagaagcatacttcaccttc 129  Q
    ||||||||||||||| | || |||||||| ||||| ||||| || ||||||||||||||||  ||||||||   ||||||||||    
T  2281 aaaaattagcctataccgaggatggtaaatggactgagccaccaaccatgataattgaaggggagagaagcgagcttcaccttc 2198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 64284 - 64332
Alignment:
Q  67 atggtaaacggactaagccagcacccatgataattgaaggaaagagaag 115  Q
    ||||| || ||||||||||| ||  ||||||||||||||||||||||||    
T  64284 atggtgaaaggactaagccaccaagcatgataattgaaggaaagagaag 64332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 64404 - 64444
Alignment:
Q  183 ttgccattaaataacatgttatttctctcattccaaatttc 223  Q
    ||||||||||||||| |||||||||| || |||||||||||    
T  64404 ttgccattaaataacctgttatttctttctttccaaatttc 64444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University