View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17002_low_29 (Length: 288)
Name: NF17002_low_29
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 34288208 - 34288464
Alignment:
| Q |
16 |
aatatgttgtcattttcactttcccttatgaaattgcatgttaatattttggagagcttaatgaatataatcaattttattaccttggcattctttgaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34288208 |
aatatgttgtcattttcactttcccttatgaaattgcatgttaatattttggagagcttaatgaatataatcaattttattaccttggcattctttgaac |
34288307 |
T |
|
| Q |
116 |
gagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatcatgagtataagagtcgctatgacctaacaacatgaccttatcatggtgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34288308 |
gagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatcatgagtataagagtcgctatgacctaacaacatgaccttatcatggtgt |
34288407 |
T |
|
| Q |
216 |
gtcatgtaattgttagagagcgttatagcggtagaaccataaatagcatcaatcaaa |
272 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34288408 |
gtcatgtaattgttagagatcgttatagcggtagaaccataaatagcatcaatcaaa |
34288464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 39076132 - 39076061
Alignment:
| Q |
95 |
ttaccttggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatc |
166 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||| ||||| || |||||||| |||||||| |
|
|
| T |
39076132 |
ttaccttggcattctttgaactagtccttctccaaaatggttaaaggcaatggtaacttgcatattcttatc |
39076061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 94 - 272
Target Start/End: Complemental strand, 43131567 - 43131389
Alignment:
| Q |
94 |
attaccttggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatcatgagtataagagtcgctatgacctaa |
193 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| ||||||||||| || |||||||||||||| || |||||||||| || |||||||| || |
|
|
| T |
43131567 |
attaccttggcattctttgaacaaggccttcaccaaagtgattaaaagcaatagtaacttgcatgttcttgtcttgagtataagtatcactatgacccaa |
43131468 |
T |
|
| Q |
194 |
caacatgaccttatcatggtgtgtcatgtaattgttagagagcgttatagcggtagaaccataaatagcatcaatcaaa |
272 |
Q |
| |
|
| ||| || ||||||||||| ||||| ||||||||||||| || || || || || |||| |||||||||||||||| |
|
|
| T |
43131467 |
aagcataactttatcatggtgagtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaa |
43131389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 7593252 - 7593343
Alignment:
| Q |
96 |
taccttggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcatgttcttatcatgagtataagagtcgctatg |
187 |
Q |
| |
|
||||||||||||||||| || || ||||||||||| || ||||||||||| || |||||||||| ||| || || |||||||| || ||||| |
|
|
| T |
7593252 |
taccttggcattctttggacaagcccttcaccaaaatgattaaaagcaatagtaacttgcatgtccttgtcttgtgtataagaatcactatg |
7593343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 50436794 - 50436850
Alignment:
| Q |
101 |
tggcattctttgaacgagtccttcaccaaagtggttaaaagcaattgtgacttgcat |
157 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||||| |
|
|
| T |
50436794 |
tggcattctttgaacaagtccttcaccaaagtgattaaacgctattgttacttgcat |
50436850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University