View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_3 (Length: 580)
Name: NF17002_low_3
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Original strand, 12268463 - 12269018
Alignment:
| Q |
1 |
gtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacttacaaagtatgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12268463 |
gtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacgtacaaagtatgaa |
12268562 |
T |
|
| Q |
101 |
acacattttggaaatgttacaaaatcaccatagcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268563 |
acacattttggaaatgttacaaaatcaccatatcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtag |
12268662 |
T |
|
| Q |
201 |
tggctacccatccccccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaa-aataaaggtctaatgca |
299 |
Q |
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| T |
12268663 |
tggctacccat--------atcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaaaaataaaggtctaatgca |
12268754 |
T |
|
| Q |
300 |
aatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268755 |
aatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggt |
12268854 |
T |
|
| Q |
400 |
agttagtcaagtaaaacaatgcgttgtgatgatgttaaagattatgctagtcgtaactcatgctcgtgatttacttcaatcacaagtaattgagccaaat |
499 |
Q |
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| T |
12268855 |
agttagtcaagtaaaacaatgcgttgtgatgatgttaatgattatgctagtcgtaactcatgctcgtgatttacttcaatcacaagtaattgagccaaat |
12268954 |
T |
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| Q |
500 |
ggnnnnnnnnnnccgcatattacgtgtcgtgctaggtgtttgaatccattgaaatatcacaaat |
563 |
Q |
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| T |
12268955 |
ggttttttttttccgcatattacgtgtcgtgctaggtgtttgaatccattgaaatatcacaaat |
12269018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 12270163 - 12270276
Alignment:
| Q |
165 |
gtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttata |
264 |
Q |
| |
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|||||| |||||||| |||||||| ||||| ||||||||||||| ||| |||||||| |||||||||||||||| |||||||||||||||| |||| | |
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| T |
12270163 |
gtgagtaagtgttacaaaaagtcataaatgtagtagtggctaccaatcaccccatataaatattttcatttatttgcaataaattataaattactttaaa |
12270262 |
T |
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| Q |
265 |
gaatcgtttgctat |
278 |
Q |
| |
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|||||||| ||||| |
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| T |
12270263 |
gaatcgttggctat |
12270276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 459
Target Start/End: Complemental strand, 43777849 - 43777715
Alignment:
| Q |
325 |
caaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaaaacaatgcgtt |
424 |
Q |
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|||||||| |||||||||| | | |||||||| ||| ||||| ||||||| |||||| | ||||||||||| ||| || || || ||| |||| || |
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| T |
43777849 |
caaaatctgaaacatcacagagttgagaatttaagtggagattaagaaaagttaaatattaaaaagagttatggcagtgagccatgtgaaaaaatgtttt |
43777750 |
T |
|
| Q |
425 |
gtgatgatgttaaagattatgctagtcgtaactca |
459 |
Q |
| |
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| ||||||||| |||||||||||| |||||||| |
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| T |
43777749 |
gcgatgatgttggtgattatgctagttgtaactca |
43777715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 17032022 - 17032100
Alignment:
| Q |
5 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
85 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||| ||||||| |
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| T |
17032022 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 17562458 - 17562536
Alignment:
| Q |
5 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
85 |
Q |
| |
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|||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||| ||||||| |
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| T |
17562458 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
23 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
76 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
23 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
76 |
Q |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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