View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_33 (Length: 243)

Name: NF17002_low_33
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_33
NF17002_low_33
[»] chr1 (3 HSPs)
chr1 (144-237)||(2069117-2069210)
chr1 (158-237)||(2073477-2073556)
chr1 (19-63)||(2068985-2069029)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 2069117 - 2069210
Alignment:
Q  144 gaaggttgaatggtacaactcaactgcccttgtgttcccccttggagcaagtgttataggcctccttccgagcaatgattgattttcttctcac 237  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2069117 gaaggttgaatggtacaactcaaccgcccttgtgttcccccttggagcaagtgttataggcctccttcggagcaatgattgattttcttctcac 2069210  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 2073477 - 2073556
Alignment:
Q  158 acaactcaactgcccttgtgttcccccttggagcaagtgttataggcctccttccgagcaatgattgattttcttctcac 237  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2073477 acaactcaaccgcccttgtgttcccccttggagcaagtgttataggcctccttcggagcaatgattgattttcttctcac 2073556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 2068985 - 2069029
Alignment:
Q  19 aaagaaccctcatcttctgtctctcacttacaagatatattatta 63  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||||    
T  2068985 aaagaaccctcatcctctctctctcacttataagatatattatta 2069029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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