View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_36 (Length: 227)
Name: NF17002_low_36
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 20989967 - 20990166
Alignment:
| Q |
15 |
gaagaaaaatgtaacatgaaatgcaactccatcctagcctttgaatcaaaataggaacaacggtgtagtacaaatataaaaatcaaccaacaaaaacaat |
114 |
Q |
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| T |
20989967 |
gaagaaaaatgtaacatgaaatgcaactccatcctagcctttgaatcaaaataggaacgacggtgtagtacaaatataaaaatcaaccaacaaaaacaat |
20990066 |
T |
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| Q |
115 |
ggcaactccaatgtatatcaaagtcaggctggtagcctttttcctgcatggcttgcacgagatctgacgccttcttaagattcttttccatgtgataact |
214 |
Q |
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| T |
20990067 |
ggcaactccaatgtatatcaaagtcaggctggtagcctttttcctgcatggcttgcacgagatctgacgccttcttaagattcttttccatgtgataact |
20990166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 21001341 - 21001433
Alignment:
| Q |
122 |
ccaatgtatatcaaagtcaggctggtagcctttttcctgcatggcttgcacgagatctgacgccttcttaagattcttttccatgtgataact |
214 |
Q |
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| T |
21001341 |
ccaatgtatatcaaagtcaggctggtagcctttttcctgcatggcttgcacgagatatgacgccttcttaagattcttttccatgtgataact |
21001433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 21001163 - 21001224
Alignment:
| Q |
62 |
aaaataggaacaacggtgtagtacaaatataaaaatcaaccaacaaaaacaatggcaactcca |
124 |
Q |
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| T |
21001163 |
aaaataggaacattggtgtagtacaaatataaaa-tcaaccaacaaaaacaatggcaactcca |
21001224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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