View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_39 (Length: 206)
Name: NF17002_low_39
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_39 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 31860940 - 31860796
Alignment:
| Q |
62 |
ctatctacactaattaaaaattaatcaaactgcgtcactgtagctaagtagagttccttctagttagtgacaagtacagctcaaaaacttgctttgcatt |
161 |
Q |
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| T |
31860940 |
ctatctacactaattaaaaattaatcaaactgcgtcactgtagctaagtagagttccttctagttagtgacaagtacagctcaaaaacttgcgttgcaat |
31860841 |
T |
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| Q |
162 |
aatgagagtcttcacatggagtcatcaactacaagcatacaagca |
206 |
Q |
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| T |
31860840 |
aatgagagtcttcacatggagtcatcaactacaagcatacaagca |
31860796 |
T |
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