View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_4 (Length: 569)

Name: NF17002_low_4
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_4
NF17002_low_4
[»] chr4 (3 HSPs)
chr4 (1-198)||(17636386-17636583)
chr4 (1-38)||(14145076-14145113)
chr4 (1-69)||(21079266-21079334)
[»] chr2 (1 HSPs)
chr2 (1-216)||(3914758-3914973)
[»] chr8 (2 HSPs)
chr8 (77-215)||(15656314-15656452)
chr8 (1-123)||(16932872-16932995)
[»] chr7 (2 HSPs)
chr7 (342-457)||(25348739-25348853)
chr7 (342-457)||(25354433-25354547)
[»] chr5 (1 HSPs)
chr5 (1-113)||(17764407-17764519)
[»] scaffold0021 (1 HSPs)
scaffold0021 (34-178)||(139349-139493)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 17636583 - 17636386
Alignment:
Q  1 attccagtacataactatcattgatcagaggtggaattatcacccgcagagcgggttttgtaaggcttagcaatattggtctttttaagatgttgcttct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| | ||||||||||| || | |||||    
T  17636583 attccagtacataactatcattgatcagaggtggaattatcacccgtagagcgggttttgtaaggcttaccgatagtcgtctttttaaggtgcttcttct 17636484  T
Q  101 gctttcttgttaacacaggaataaaagggacttccgcagctttttgatcatactccttaactttgcgccataattccagatcaagctgaattctagcg 198  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||    
T  17636483 gctttcttgttaacataggaataaaagggacttccgcagctttttgatcatactccttaactctacgccataattccaggtcatgctgaattctagcg 17636386  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14145076 - 14145113
Alignment:
Q  1 attccagtacataactatcattgatcagaggtggaatt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14145076 attccagtacataactatcattgatcagaggtggaatt 14145113  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21079334 - 21079266
Alignment:
Q  1 attccagtacataactatcattgatcagaggtggaattatcacccgcagagcgggttttgtaaggctta 69  Q
    ||||||||||| ||| ||||||||||||| |  |||||| |||||| ||| ||||||||||| ||||||    
T  21079334 attccagtacaaaacaatcattgatcagaagaagaattaccacccgtagaacgggttttgtacggctta 21079266  T

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Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 3914758 - 3914973
Alignment:
Q  1 attccagtacataactatcattgatcagaggtggaattatcacccgcagagcgggttttgtaaggcttagcaatattggtctttttaagatgttgcttct 100  Q
    |||||| |||||||||||||||| ||||| || ||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||| || ||||||     
T  3914758 attccaatacataactatcattggtcagatgtagaattatcacccgtagagcgggttttgtagggcttaccaataatggtctttttaaggtgctgcttca 3914857  T
Q  101 gctttcttgttaacacaggaataaaagggacttccgcagctttttgatcatactccttaactttgcgccataattccagatcaagctgaattctagcgtt 200  Q
    |||| |||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |    
T  3914858 gcttccttgttaacacatgaataaaagggacttccacaacattttgatcatactccttaactttgcgccataattccaggtcatgttgaattctagcgct 3914957  T
Q  201 aatgtgaacctctgta 216  Q
    | | |||| |||||||    
T  3914958 actatgaatctctgta 3914973  T

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Target: chr8 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 15656314 - 15656452
Alignment:
Q  77 tggtctttttaagatgttgcttctgctttcttgttaacacaggaataaaagggacttccgcagctttttgatcatactccttaactttgcgccataattc 176  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  15656314 tggtctttttaaggtgctgcttctgctttcttgttaacacaagaataaaagcgacttccgcagcttttttatcatactccttaactctgcgcaataattc 15656413  T
Q  177 cagatcaagctgaattctagcgttaatgtgaacctctgt 215  Q
    ||| ||| |||||||||||| | || |||||||||||||    
T  15656414 caggtcatgctgaattctagagctattgtgaacctctgt 15656452  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 16932872 - 16932995
Alignment:
Q  1 attccagtacataactatcattgatcagaggtggaattatcacccgcagagcgggtttt-gtaaggcttagcaatattggtctttttaagatgttgcttc 99  Q
    ||||||||| |||||||||| |||| |||||| ||||||||||||| || || | |||| |||||||||| ||||| ||||||||||||| || ||||||    
T  16932872 attccagtatataactatcactgattagaggtagaattatcacccgtagggcagatttttgtaaggcttaccaataatggtctttttaaggtgctgcttc 16932971  T
Q  100 tgctttcttgttaacacaggaata 123  Q
    |||||  | ||||||||| |||||    
T  16932972 tgcttcttggttaacacatgaata 16932995  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 457
Target Start/End: Complemental strand, 25348853 - 25348739
Alignment:
Q  342 aacatatttttaaacacctttacaaaattgatatatgttggttatttatatgagcctnnnnnnngagcgataatctattatcaaaatttactttatttag 441  Q
    |||||||||| ||| ||||| | |||||| ||||||||||||||||||||| |||||       |||| ||| ||||| ||||||||||||||||||||     
T  25348853 aacatattttcaaataccttca-aaaatttatatatgttggttatttatataagcctaaaaaaagagcaatagtctatcatcaaaatttactttatttac 25348755  T
Q  442 tccatggaaggttaga 457  Q
    | ||||||||||||||    
T  25348754 ttcatggaaggttaga 25348739  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 457
Target Start/End: Complemental strand, 25354547 - 25354433
Alignment:
Q  342 aacatatttttaaacacctttacaaaattgatatatgttggttatttatatgagcctnnnnnnngagcgataatctattatcaaaatttactttatttag 441  Q
    |||||||||| ||| ||||| | |||||| ||||||||||||||||||||| |||||       |||| ||| ||||| ||||||||||||||||||||     
T  25354547 aacatattttcaaataccttca-aaaatttatatatgttggttatttatataagcctaaaaaaagagcaatagtctatcatcaaaatttactttatttac 25354449  T
Q  442 tccatggaaggttaga 457  Q
    | ||||||||||||||    
T  25354448 ttcatggaaggttaga 25354433  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 17764519 - 17764407
Alignment:
Q  1 attccagtacataactatcattgatcagaggtggaattatcacccgcagagcgggttttgtaaggcttagcaatattggtctttttaagatgttgcttct 100  Q
    ||||||||||| |||| ||| |||||||  || ||||||||||||| ||| ||||||||||| |||||| | | | ||||||| || || ||||| ||||    
T  17764519 attccagtacaaaactgtcaatgatcagtagtagaattatcacccgtagaacgggttttgtacggcttacccacaatggtcttctttaggtgttgtttct 17764420  T
Q  101 gctttcttgttaa 113  Q
    | || ||||||||    
T  17764419 gtttccttgttaa 17764407  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 139349 - 139493
Alignment:
Q  34 gaattatcacccgcagagcgggttttgtaaggcttagcaatattggtctttttaagatgttgcttctgctttcttgttaacacaggaataaaagggactt 133  Q
    |||||||||| || ||| ||||||||||| | |||| | | ||| ||||| ||||||||||||||||| || || ||||| || ||||  || |   |||    
T  139349 gaattatcacgcgtagaacgggttttgtacgacttacccacattagtcttcttaagatgttgcttctgtttcctagttaagaccggaaggaatgcttctt 139448  T
Q  134 ccgcagctttttgatcatactccttaactttgcgccataattcca 178  Q
    | ||||| |||| ||||||||| |||||   || |||||||||||    
T  139449 cggcagcctttttatcatactctttaacgcggcaccataattcca 139493  T

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