View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17002_low_5 (Length: 550)
Name: NF17002_low_5
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17002_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Original strand, 38038354 - 38038878
Alignment:
| Q |
18 |
attttagagatcattcttttattgatatgataaatcatcgtcttcttcannnnnnn-ccttgcaggagcttccagcaggtgactggcactgcattcactg |
116 |
Q |
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| T |
38038354 |
attttagagatcattcttttattgatatgataaatcatcgtctttttcattttttttccttgcaggagcttccagcaggtgactggcactgcattcactg |
38038453 |
T |
|
| Q |
117 |
ctcttgtaaattttgtggatcctatcaagaaggaagtgaaaatcccgctgctggatgtgtctttcgtgcatgtccttcatgcagaaccagatgtattttc |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38038454 |
ctcttgtaaattttgtggatcctatcaacaaggaagtgaaaatcccgctactggatgtgtctttcgtgcatgtccttcatgcagaaccagatgtattttc |
38038553 |
T |
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| Q |
217 |
tcttcttctttttcttatactaattatatatctcctcttcattaattaactcaatattcttttctcaataatgtattttctttccccatcaaaaagaaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38038554 |
tcttcttctttttcttatactaattatatatctcctcttcattaattaactcaatattcttttctcaataatgtattttctttccccatcaaaaagaaac |
38038653 |
T |
|
| Q |
317 |
aaatcttttttgataaataatgtgttaacatcaaacttagcatcatgtgtgctctatagttgaaagattaataaactaaactttatatctctcatgtaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38038654 |
aaatcttttttgataaataatgtgttaacatcaaacttagcatcatgtgtgctctatagttgaaagataaataaactaaactttatatctctcatgtaga |
38038753 |
T |
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| Q |
417 |
tcatataaactgtgttgaggccaacagtgatgagttcaatcgtgaatctttttgtggaaaaagatgtcaacaggtatgata-nnnnnnnncatattttaa |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38038754 |
tcatataaactgtgttgaggccaacagtgatgagttcaatcgtgaatctttttgtggaaaaagatgtcaacaggtatgatatttttttttcatattttaa |
38038853 |
T |
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| Q |
516 |
aatcttgaacattgttcttaatttt |
540 |
Q |
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| T |
38038854 |
aatcttgaacattgttcttaatttt |
38038878 |
T |
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