View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_7 (Length: 491)

Name: NF17002_low_7
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_7
NF17002_low_7
[»] chr5 (1 HSPs)
chr5 (14-473)||(34936410-34936870)
[»] chr1 (5 HSPs)
chr1 (217-339)||(17404391-17404513)
chr1 (50-156)||(17404622-17404728)
chr1 (61-151)||(32730188-32730278)
chr1 (219-341)||(32729950-32730072)
chr1 (270-334)||(16586889-16586953)
[»] chr7 (6 HSPs)
chr7 (60-151)||(18132650-18132741)
chr7 (60-151)||(18144437-18144528)
chr7 (275-340)||(18132910-18132975)
chr7 (275-340)||(18144697-18144762)
chr7 (267-319)||(21376409-21376461)
chr7 (158-199)||(29802043-29802084)
[»] chr2 (1 HSPs)
chr2 (163-202)||(20213787-20213826)
[»] chr3 (2 HSPs)
chr3 (392-434)||(42679286-42679328)
chr3 (158-202)||(53505105-53505149)
[»] chr8 (1 HSPs)
chr8 (158-199)||(18008986-18009027)
[»] chr6 (1 HSPs)
chr6 (158-202)||(2013467-2013511)
[»] chr4 (1 HSPs)
chr4 (158-202)||(54846172-54846216)


Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 473
Target Start/End: Complemental strand, 34936870 - 34936410
Alignment:
Q  14 cagagataccttcgaagagatatgcttgtgcctaacgtcatcagcaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgc 113  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34936870 cagagataccttcgaagagatatgcttgtgcctaacgtcattaacaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacacctcgc 34936771  T
Q  114 accgagtaacgatgattgggatcaagcaaccacttccacttgt--------------acaaagcaatgttatgtaacaaagcagaacactccctcacact 199  Q
    || ||||||| |||||| |||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||    
T  34936770 actgagtaacaatgattaggatcaagcaaccacttccacttgtcaagaacatgctctacaaagcaatgttatgtaacaaagcagaacactccctcacact 34936671  T
Q  200 ctcacacacccccacatcatccgcccaccctagcctctccatctcctccactgtgttctcctagttcacggccaaatcaaataggcggggaaatttaatc 299  Q
    ||||||| |||||||             ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  34936670 ctcacacccccccac-------------cctagcctctccatctcctccaccgtgttctcctggttcacggccaaatcaaataggcggggaaatttaatc 34936584  T
Q  300 cttaacggaatttccccaacgtagttatcatgccagaacaaagtcatatgtttacattttggtggttaaagatggaaatttctaatttaactttgttcga 399  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  34936583 cttaaccgaatttccccaacacagttatcatgccagaacaaagtcatatgtttatattttggtggttgaagatggaaatttctaatttaactttgttcga 34936484  T
Q  400 taaagttaaacgtttatcattttgatggttgaagataaaaatcttttatttagcttatgatctccagctttgat 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34936483 taaagttaaacgtttatcattttgatggttgaagataaaaatctttaatttagcttatgatctccagctttgat 34936410  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 17404513 - 17404391
Alignment:
Q  217 catccgcccaccctagcctctccatctcctccactgtgttctcctagttcacggccaaatcaaataggcggggaaatttaatccttaacggaatttcccc 316  Q
    ||||| ||||||||| |||||||||||||||||| | |  || || |||||||||| ||||||||||||||||||||||  |||| |||| |||| ||||    
T  17404513 catccacccaccctaacctctccatctcctccaccgaggacttctggttcacggccgaatcaaataggcggggaaatttgttcctcaacgaaattccccc 17404414  T
Q  317 aacgtagttatcatgccagaaca 339  Q
    |||  || |||||||||||||||    
T  17404413 aacccagctatcatgccagaaca 17404391  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 17404728 - 17404622
Alignment:
Q  50 gtcatcagcaagattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttc 149  Q
    ||||||||| ||||||||||||| | || |||| ||||||||||||||| |||| ||  ||||||||||||||| ||||    ||||||||||||| |||    
T  17404728 gtcatcagcgagattcctaaccataggtacatctgtcgtagtaaaaaagtgatatacgcctcgcaccgagtaaccatgaaaaagatcaagcaaccatttc 17404629  T
Q  150 cacttgt 156  Q
    |||||||    
T  17404628 cacttgt 17404622  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 32730278 - 32730188
Alignment:
Q  61 gattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttcca 151  Q
    |||||||||||||  ||||||| || ||||||||||||||||| ||| ||||||||||||||| |||| | ||||| |||||||| |||||    
T  32730278 gattcctaaccacgggttcatcagttgtagtaaaaaagcgatatacacctcgcaccgagtaaccatgaataggatcgagcaaccatttcca 32730188  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 32730072 - 32729950
Alignment:
Q  219 tccgcccaccctagcctctccatctcctccactgtgttctcctagttcacggccaaatcaaataggcggggaaatttaatccttaacggaatttccccaa 318  Q
    ||||||||||||| ||||  |||||| |||||   |  |||||  ||||||||||||||||||||||| ||||||||  || | ||| |||||||||| |    
T  32730072 tccgcccaccctaacctcaacatctcatccaccaaggactcctgattcacggccaaatcaaataggcgaggaaatttgttcatcaactgaatttccccga 32729973  T
Q  319 cgtagttatcatgccagaacaaa 341  Q
    |  |||| || ||||||||||||    
T  32729972 cccagttgtcgtgccagaacaaa 32729950  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 16586953 - 16586889
Alignment:
Q  270 gccaaatcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttatcatgcca 334  Q
    |||| |||||| |||||||||||||||||||  || ||||||||||| ||  | |||||||||||    
T  16586953 gccagatcaaaaaggcggggaaatttaatccgcaaaggaatttcccctacccaattatcatgcca 16586889  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 18132650 - 18132741
Alignment:
Q  60 agattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttcca 151  Q
    ||||||||||||||| || |||| || |  ||||||||||| |||||| |||||||||||||||  ||| | ||||| |||||||| |||||    
T  18132650 agattcctaaccacaggtacatctgttgccgtaaaaaagcggtagacacctcgcaccgagtaaccgtgaataggatcgagcaaccatttcca 18132741  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 18144437 - 18144528
Alignment:
Q  60 agattcctaaccacatgttcatcggtcgtagtaaaaaagcgatagacagctcgcaccgagtaacgatgattgggatcaagcaaccacttcca 151  Q
    ||||||||||||||| || |||| || |  ||||||||||| |||||| |||||||||||||||  ||| | ||||| |||||||| |||||    
T  18144437 agattcctaaccacaggtacatctgttgccgtaaaaaagcggtagacacctcgcaccgagtaaccgtgaataggatcgagcaaccatttcca 18144528  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 18132910 - 18132975
Alignment:
Q  275 atcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttatcatgccagaacaa 340  Q
    ||||||||| || ||||||||| ||||  ||||||||||||| ||  |||||||||||||||||||    
T  18132910 atcaaatagtcgaggaaatttattcctcgacggaatttcccccacccagttatcatgccagaacaa 18132975  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 18144697 - 18144762
Alignment:
Q  275 atcaaataggcggggaaatttaatccttaacggaatttccccaacgtagttatcatgccagaacaa 340  Q
    ||||||||| || ||||||||| ||||  ||||||||||||| ||  |||||||||||||||||||    
T  18144697 atcaaatagtcgaggaaatttattcctcgacggaatttcccccacccagttatcatgccagaacaa 18144762  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 21376409 - 21376461
Alignment:
Q  267 acggccaaatcaaataggcggggaaatttaatccttaacggaatttccccaac 319  Q
    |||| ||||||||||||||||||||||||||   ||| |||||||||||||||    
T  21376409 acggacaaatcaaataggcggggaaatttaagttttagcggaatttccccaac 21376461  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 29802084 - 29802043
Alignment:
Q  158 caaagcaatgttatgtaacaaagcagaacactccctcacact 199  Q
    |||| ||||||||| |||||||||| ||||||||||||||||    
T  29802084 caaaacaatgttatttaacaaagcataacactccctcacact 29802043  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Original strand, 20213787 - 20213826
Alignment:
Q  163 caatgttatgtaacaaagcagaacactccctcacactctc 202  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  20213787 caatgttatgtaacaaagcagaacactccctcagactctc 20213826  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 42679328 - 42679286
Alignment:
Q  392 ttgttcgataaagttaaacgtttatcattttgatggttgaaga 434  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  42679328 ttgttcgataaagttaagcgtttatctttttgatggttgaaga 42679286  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 53505149 - 53505105
Alignment:
Q  158 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 202  Q
    |||| |||||||| ||||||||||| |||||||||||||||||||    
T  53505149 caaaacaatgttaagtaacaaagcacaacactccctcacactctc 53505105  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 18009027 - 18008986
Alignment:
Q  158 caaagcaatgttatgtaacaaagcagaacactccctcacact 199  Q
    |||| |||||||||||||||||||||| ||||||| ||||||    
T  18009027 caaaacaatgttatgtaacaaagcagagcactcccgcacact 18008986  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 2013511 - 2013467
Alignment:
Q  158 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 202  Q
    |||| ||| ||||||||||||| ||||||||||||||| ||||||    
T  2013511 caaaacaacgttatgtaacaaaacagaacactccctcatactctc 2013467  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 54846172 - 54846216
Alignment:
Q  158 caaagcaatgttatgtaacaaagcagaacactccctcacactctc 202  Q
    |||| ||||||||||||  ||| ||||||||||||||||||||||    
T  54846172 caaaacaatgttatgtagtaaaacagaacactccctcacactctc 54846216  T

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