View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17002_low_9 (Length: 471)

Name: NF17002_low_9
Description: NF17002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17002_low_9
NF17002_low_9
[»] chr8 (3 HSPs)
chr8 (171-279)||(43618613-43618721)
chr8 (19-100)||(43618522-43618603)
chr8 (379-461)||(43618795-43618877)
[»] chr3 (4 HSPs)
chr3 (114-234)||(5565152-5565280)
chr3 (108-164)||(14175269-14175325)
chr3 (227-255)||(50834437-50834465)
chr3 (227-255)||(50841388-50841416)
[»] chr2 (1 HSPs)
chr2 (19-108)||(275016-275105)
[»] chr7 (1 HSPs)
chr7 (171-207)||(7854246-7854282)
[»] scaffold0007 (1 HSPs)
scaffold0007 (114-164)||(257685-257735)


Alignment Details
Target: chr8 (Bit Score: 101; Significance: 7e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 171 - 279
Target Start/End: Original strand, 43618613 - 43618721
Alignment:
Q  171 agatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaacgaaatgagggcataagaagaagggtttttgtgttctagattaataatg 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  43618613 agatgaagacgatgatgcttttactttagtgggagaaggctaaaaaatgaagcaaatgagggcataagaagaagggtttttgtgttctagattaataatg 43618712  T
Q  271 atgtcacct 279  Q
    |||||||||    
T  43618713 atgtcacct 43618721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 43618522 - 43618603
Alignment:
Q  19 aaccaccagaaatagcatctttaagctcttccagctttgcttccaccttctctttcacagggctgggtaccttttctcgtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43618522 aaccaccagaaatagcatctttaagctcttccagctttgcttccaccttctctttcacagggctgggtaccttttctcgtag 43618603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 43618795 - 43618877
Alignment:
Q  379 tgcgcaattgctagtatttaggggggcaatattgcaatgaagaaatttttgtttaagggttgatgcacctctcttcccctatg 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43618795 tgcgcaattgctagtatttaggggggcaatattgcaatgaagaaatttttgtttaagggttgatgcacctctcttcccttatg 43618877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 5565280 - 5565152
Alignment:
Q  114 tggtcaacgacggtggtgcaactccggcgtggtggaaagcaagtgggtttttgtaga--------agatgaagacgatgatgcttttactttagtgggag 205  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||        |||| ||||| ||||||||||||||||||||||||    
T  5565280 tggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtggg-ttttgtagaggacgaagagattaagactatgatgcttttactttagtgggag 5565182  T
Q  206 aaggct-aaaaaatgaacgaaatgagggca 234  Q
    |||||| ||||||||| |||||| ||||||    
T  5565181 aaggctgaaaaaatgatcgaaataagggca 5565152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 14175269 - 14175325
Alignment:
Q  108 acgcgatggtcaacgacggtggtgcaactccggcgtggtggaaagcaagtgggtttt 164  Q
    ||||| ||||||||| |  ||||||||||||||||||||||||||||| ||||||||    
T  14175269 acgcggtggtcaacgtcaatggtgcaactccggcgtggtggaaagcaaatgggtttt 14175325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 50834465 - 50834437
Alignment:
Q  227 tgagggcataagaagaagggtttttgtgt 255  Q
    |||||||||||||||||||||||||||||    
T  50834465 tgagggcataagaagaagggtttttgtgt 50834437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 50841388 - 50841416
Alignment:
Q  227 tgagggcataagaagaagggtttttgtgt 255  Q
    |||||||||||||||||||||||||||||    
T  50841388 tgagggcataagaagaagggtttttgtgt 50841416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 275105 - 275016
Alignment:
Q  19 aaccaccagaaatagcatctttaagctcttccagctttgcttccaccttctctttcacagggctgggtaccttttctcgtagctctttca 108  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||  ||||||||||||| |||||||||||    
T  275105 aaccaccagaaatagcatctttaagctctaccaactttgcttcaaccttttctttcacagggccaggtaccttttctcctagctctttca 275016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 7854282 - 7854246
Alignment:
Q  171 agatgaagacgatgatgcttttactttagtgggagaa 207  Q
    |||||||||||||||||||||||||||||||||||||    
T  7854282 agatgaagacgatgatgcttttactttagtgggagaa 7854246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 257735 - 257685
Alignment:
Q  114 tggtcaacgacggtggtgcaactccggcgtggtggaaagcaagtgggtttt 164  Q
    ||||||||||| |||||  ||||||||||||| ||||||||| ||||||||    
T  257735 tggtcaacgacagtggtttaactccggcgtggaggaaagcaaatgggtttt 257685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University