View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17003_high_10 (Length: 353)
Name: NF17003_high_10
Description: NF17003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17003_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 54 - 334
Target Start/End: Original strand, 13210818 - 13211098
Alignment:
| Q |
54 |
catgacattctccacgttcctaaacttcctattcccacccccaccatcactattcatcaccaccatgtccgtcataacatgtgtctcacttgcaaacgca |
153 |
Q |
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| T |
13210818 |
catgacattctccacgttcctaaacttcctattcccacccccaccttcactattcatcaccaccatgtctgtcataacatgtgtctcccttgcaaacgca |
13210917 |
T |
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| Q |
154 |
ggtatcaatgaaattagagggaagcatttaaactattccaaattctggaacgtagataataacaatggtgataagaagaagaagaagatgataaaattgt |
253 |
Q |
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| T |
13210918 |
ggtatcaatgaagttagagggaagcatttaaactattccaaattctggaacgtagaaaataacaatggtgataagaagaagaagaagatgataaaattgt |
13211017 |
T |
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| Q |
254 |
cgagtaaaagtggtatgttattgttatatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttcctgatgatg |
334 |
Q |
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| T |
13211018 |
cgagtaaaagtggtatgttattgttgtatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttcctgatgatg |
13211098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 13184804 - 13184860
Alignment:
| Q |
162 |
tgaaattagagggaagcatttaaactattccaaattctggaacgtagataataacaa |
218 |
Q |
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| T |
13184804 |
tgaaattagaggaaagcatttgaattattccaaattttggaatgcaaataataacaa |
13184860 |
T |
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